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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagaaaacttagggattgttgatagctacctgaaaagttttaattttcgggcgattttgcgttttttttattttctgggtaacgttggaatcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGGTTCTCTCTTACGTGGTGAATGAAGTGGTTGTCAATGGGCTTGCCAACAG

Basic information

species Glycine max
transcript GLYMA16G19270.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7234392|gb|AW569730.1|AW569730
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|254339193|gb|GR847910.1|GR847910
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|11413592|gb|BF425603.1|BF425603
EST:     AAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: AAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|192303525|gb|FG995931.1|FG995931
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|38191192|gb|CF920398.1|CF920398
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|33388247|gb|CA851454.1|CA851454
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|208046317|gb|GD844225.1|GD844225
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|254339194|gb|GR847911.1|GR847911
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|193385286|gb|FK352748.1|FK352748
EST:     GATTCCAGAAACATCTTCGATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|254320942|gb|GR827391.1|GR827391
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|7589011|gb|AW704794.1|AW704794
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|208157710|gb|GD953347.1|GD953347
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|16348831|gb|BI974426.1|BI974426
EST:     CCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: CCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|254342034|gb|GR853171.1|GR853171
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|193459901|gb|FK422652.1|FK422652
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|254349082|gb|GR860354.1|GR860354
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|14260041|gb|BG882949.1|BG882949
EST:     TCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: TCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|27424668|gb|CA936188.1|CA936188
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|15000946|gb|BI321760.1|BI321760
EST:     AAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: AAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|193607144|gb|FK557421.1|FK557421
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|192303524|gb|FG995930.1|FG995930
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
EST: gi|19053736|gb|BM732403.1|BM732403
EST:     GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAG                         TTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG
genomic: GATTCCAGAAACATCTTCAATCAATCTCCCCTCGTCTCCTCTCAATCAAGgtttgcgatt ... tcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgggcgattttgcgttttttttattttctgggtaacgttggaatcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGGTTCTCTCTTACGTGGTGAATGAAGTGGTTGTCAATGGGCTTGCCAACAG
                               gggtaac  putative branch site (score: 3)
        attttgcgtttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagaaaacttagggattgttgatagctacctgaaaagttttaattttcgggcgattttgcgttttttttattttctgggtaacgttggaatcgcttgcagTTTGAAGCTGAGAAATAATCATGGCCGGTGGTGCGAATTTCGTGCAGAGGGTTCTCTCTTACGTGGTGAATGAAGTGGTTGTCAATGGGCTTGCCAACAG

aagaaaa
- - - - - -gggattg
- - - - - - - - - - - - - -acctgaa