Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcatcactctctcataaattcccaaattagggccactcttgtgatttcgaattaggttattattgtcgttgtgaacagatctacgaaataatgttgttgttgttgtgattgatggtgtgacagGCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGTGAAGGTGGGGCCGTGCCGTTGCCGGTGCCGCCGCCTCCGTTGTTGCACA

Basic information

species Glycine max
transcript GLYMA16G18450.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298194223|gb|HO040871.1|HO040871
EST:     TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAG                         GCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGT
genomic: TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAGgtttcatcac ... ggtgtgacagGCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGT
EST: gi|120496126|gb|EH224293.1|EH224293
EST:     CAGACCGCCGAGACTGCGCGCCAGTTCCTCCAG                         GCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGT
genomic: CAGACCGCCGAGACTGCGCGCCAGTTCCTCCAGgtttcatcac ... ggtgtgacagGCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGT
EST: gi|193513566|gb|FK469154.1|FK469154
EST:     TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAG                         GCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGT
genomic: TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAGgtttcatcac ... ggtgtgacagGCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGT
EST: gi|208112351|gb|GD913708.1|GD913708
EST:     ACCGCCGAGACTGCGCGCCAGTCCCTCCAG                         GCCACAAGTTGGAAGCTTGAGGAGGGCTCTTCAGCTGTTTCTGATAGGGAG
genomic: ACCGCCGAGACTGCGCGCCAGTTCCTCCAGgtttcatcac ... ggtgtgacagGCCACAAGTTGGAAGCTTGAGGA-GGCTCTTCAGCTGTTTCTGATAGGGAG
EST: gi|120495145|gb|EH223312.1|EH223312
EST:     TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAG                         GCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGT
genomic: TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAGgtttcatcac ... ggtgtgacagGCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGT
EST: gi|208216778|gb|GE011142.1|GE011142
EST:     TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAG                         GCCACAAGTTGGAAGCTTGAGGAGGCT
genomic: TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAGgtttcatcac ... ggtgtgacagGCCACAAGTTGGAAGCTTGAGGAGGCT
EST: gi|298195719|gb|HO044110.1|HO044110
EST:     TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAG                         GCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGT
genomic: TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAGgtttcatcac ... ggtgtgacagGCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGT
EST: gi|208328012|gb|GE121204.1|GE121204
EST:     TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAG                         GCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTT
genomic: TGGAGGTCGCTCAGGGCCAGACCGCCGAGACTGCGCGCCAGTTCCTCCAGgtttcatcac ... ggtgtgacagGCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgaacagatctacgaaataatgttgttgttgttgtgattgatggtgtgacagGCCACAAGTTGGAAGCTTGAGGAGGCTCTTCAGCTGTTTCTGATAGGGAGTGAAGGTGGGGCCGTGCCGTTGCCGGTGCCGCCGCCTCCGTTGTTGCACA
                                      gattgat  putative branch site (score: 4)
                 aaataatgtt  TA-rich tract