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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagctgtgggggcagtcagatatggactccatttgcctaaccctcgtctcaccatttgattatttgttcctgacatagcttattctcttgaatccacagGCTCTTGAGGGATACAGCACCGTCCATGACCCCAACTTCCG

Basic information

species Glycine max
transcript GLYMA16G18030.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G54230.1 (Arabidopsis thaliana), 3'ss of exon 3
--------------------------------------------------------------------------------------ctagctgtgggggcagtcagatatggactccatttgcctaaccctcgtctcaccatttgattatttgttcctgacatagcttattctcttgaatccacagGCTCTTGAGGGATACAGCACCGTCCATGACCCCAACTTCCG
                                                                                        ||   |||| |      ||| ||||    ||||| ||||         |  || |    | |||||| |||||||||||||||||||| ||| |||||||||  ||||| ||  | ||    ||||| || ||    ||
gtaattgtggttttctccttacatatatgggatgataaacaagatatttttagggatgttatgaatctcaactcatccgtggagtgagagacttgggagagtgaggatgtggatgggatttggctaatgtaatatccgtcaatga--tgtttgttgctgacatagcttattctcttcaattcacagGCTCCGGAGGGTTATGGTACTCAGCATGATCCAAATCATCG

upper sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 1
----------------------------------------------------------------------------------------------------ctagctgtgggggcagtcagatatggactccatttgcctaaccctcgtctcaccatttgattatttgttcctgacatagcttattctcttgaatccacagGCTCTTGAGGGATACAGCACCGTCCATGACCCCAACTTCCG
                                                                                                      ||| ||||||       |||||||| |  |||||||||  ||||||  ||     |||||||||||| ||||||||||||||||||||||||||||||||| | ||||| ||  |  | || |||||| | ||||||||
gtttcctccttaatcacctatatgggatgataatacaagaaattagggctcttctgattgtccattttttatggcatctcatccttaagaacaatgagagaaagccgtggggcattgaggatatggaatggatttgccta--cctcgtacca-----tgattatttgttgctgacatagcttattctcttgaatccacagGCTTTGGAGGGGTATGGAGCTGTTCATGACGCAAACTTCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtctcaccatttgattatttgttcctgacatagcttattctcttgaatccacagGCTCTTGAGGGATACAGCACCGTCCATGACCCCAACTTCCG
                       tcctgac  putative branch site (score: 2)
                                      ttctcttg  putative PPT
         atttgattatttgtt  TA-rich tract