1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aggccattatattctctaattttgtcgtatcattaatcgatgtggaatctccaacaccttcgttctacaaccgtatgagtgtctctgttttctttttcagGTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTGGACAAGTTTCTGAAGCAAGCGTTTGTGGCTGCCGCGATCAAGTTCCCGA
species | Glycine max |
transcript | GLYMA16G15800.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATCATCCGAAGCCGACACCGGAAACACTTCCACCTCGCTAACCCAAACC GTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTGEST: gi|15285139|gb|BI469022.1|BI469022
genomic: AATCATCCGAAGCCGACACCGGAAACACTTCCACCTCGCTAACCCAAACCgtgagtctcc ... tctttttcagGTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTG
EST: AATCATCCGAAGCCGACACCGGAAACACTTCCACCTCGCTAACCCAAACC GTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTGEST: gi|20449333|gb|BQ253457.1|BQ253457
genomic: AATCATCCGAAGCCGACACCGGAAACACTTCCACCTCGCTAACCCAAACCgtgagtctcc ... tctttttcagGTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTG
EST: AATCATCCGAAGCCGACACCGGAAACACTTCCACCTCGCTAACCCAAACC GTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTGEST: gi|20812064|gb|BQ296542.1|BQ296542
genomic: AATCATCCGAAGCCGACACCGGAAACACTTCCACCTCGCTAACCCAAACCgtgagtctcc ... tctttttcagGTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTG
EST: AATCATCCGAAGCCGACACCGGAAACACTTCCACCTCGCTAACCCAAACC GTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTG
genomic: AATCATCCGAAGCCGACACCGGAAACACTTCCACCTCGCTAACCCAAACCgtgagtctcc ... tctttttcagGTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTG
aatctccaacaccttcgttctacaaccgtatgagtgtctctgttttctttttcagGTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTGGACAAGTTTCTGAAGCAAGCGTTTGTGGCTGCCGCGATCAAGTTCCCGA
tgtctctgttttcttt CT-rich tract
ttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggccattatattctctaattttgtcgtatcattaatcgatgtggaatctccaacaccttcgttctacaaccgtatgagtgtctctgttttctttttcagGTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTGGACAAGTTTCTGAAGCAAGCGTTTGTGGCTGCCGCGATCAAGTTCCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-ggccatt
- - - - - - - - - - - - - - - - - - - gatgtgg
- - - - - - - - - - - - - - - - - - - - - - - - ctccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtgt