1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttattcctctaattgtaagagtttttggcagtaaagagaatgttttatatatgcacattaagcatggtgatctaattggtgaactgttttacttatccagAAGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAGTTAGTGTTCATTCTGCAGCGACTCTTCAAAATAGTAACCTTACTCAACG
species | Glycine max |
transcript | GLYMA16G13570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTACACACTTTCCCTCCTTTGTCTCTACACAACAAGAGTAGCAAAATTG AAGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAGEST: gi|6133929|gb|AW132322.1|AW132322
genomic: GCTACACACTTTCCCTCCTTTGTCTCTACACAACAAGAGTAGCAAAATTGgtaggtgaca ... acttatccagAAGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAG
EST: GCTACACACTTTCCCTCCTTTGTCTCTACACAACAAGAGTAGCANAATTG AAGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAG
genomic: GCTACACACTTTCCCTCCTTTGTCTCTACACAACAAGAGTAGCAAAATTGgtaggtgaca ... acttatccagAAGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAG
tatatatgcacattaagcatggtgatctaattggtgaactgttttacttatccagAAGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAGTTAGTGTTCATTCTGCAGCGACTCTTCAAAATAGTAACCTTACTCAACG
atctaat putative branch site (score: 3)
ttttactt putative PPT
ttttacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattcctctaattgtaagagtttttggcagtaaagagaatgttttatatatgcacattaagcatggtgatctaattggtgaactgttttacttatccagAAGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAGTTAGTGTTCATTCTGCAGCGACTCTTCAAAATAGTAACCTTACTCAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - aaagagaa
- - - - - - - - - - - - - - - - - - - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attggtg