Sequence
atgc intronic sequence ATGC exonic sequence...ggaagttcttagatgatattttatttcttttccgtaatgtatgattgtttcatttgtgatactcaaatttgttgcatgacaagatgcacatttcgtgcagGAGACAGCCATTGAAGACTATTTCAAGCCTCTAGACAAGGAAGCTGAGATTATAATGAAAATGCAAATACAAGGGGAAGAGAGAACTTCAGAGATTATGA
Basic information
species | Glycine max |
transcript | GLYMA16G13540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192323556|gb|FK019027.1|FK019027EST: GGCGAATGGTTGATGAGATGAAAGCTTTGAATAAGAAGCTGGAAGAAACA GAGACAGCCATTGAAGACTATTTCAAGCCTCTAGACAAGGAAGCTGAGATT
genomic: GGCGAATGGTTGATGAGATGAAAGCTTTGAATAAGAAGCTGGAAGAAACAgtaagttgta ... tttcgtgcagGAGACAGCCATTGAAGACTATTTCAAGCCTCTAGACAAGGAAGCTGAGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttcatttgtgatactcaaatttgttgcatgacaagatgcacatttcgtgcagGAGACAGCCATTGAAGACTATTTCAAGCCTCTAGACAAGGAAGCTGAGATTATAATGAAAATGCAAATACAAGGGGAAGAGAGAACTTCAGAGATTATGA
aaatttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggaagttcttagatgatattttatttcttttccgtaatgtatgattgtttcatttgtgatactcaaatttgttgcatgacaagatgcacatttcgtgcagGAGACAGCCATTGAAGACTATTTCAAGCCTCTAGACAAGGAAGCTGAGATTATAATGAAAATGCAAATACAAGGGGAAGAGAGAACTTCAGAGATTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcac