1 5' 3' | 2 5' 3' | 3 5' 3' |
...tattaatgactctgattcttgattgagttggaataggagatttattaacatttgaaacttgtatttattgaaatcacttttcaatgtgtcaatttggcagCAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTTCCTTATACAGCATATTTTGACAAGGCACGGAAAGGTCGAACTGGCACAA
species | Glycine max |
transcript | GLYMA16G12160.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGCTTTTCAATTTCTGGGTTTTCAAGCTTCGTGTAGAAGGAAATGGCA CAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTTEST: gi|192331120|gb|FK020340.1|FK020340
genomic: TCTGCTTTTCAATTTCTGGGTTTTCAAGCTTCGTGTAGAAGGAAATGGCAgtaagtttta ... aatttggcagCAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTT
EST: TCTGCTTTTCAATTTCTGGGTTTTCAAGCTTCGTGTAGAAGGAAATGGCA CAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTTEST: gi|207764093|gb|GD737908.1|GD737908
genomic: TCTGCTTTTCAATTTCTGGGTTTTCAAGCTTCGTGTAGAAGGAAATGGCAgtaagtttta ... aatttggcagCAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTT
EST: TCTGCTTTTCAATTTCNGGGTTTTCAAGCTTCGTGTAGAAGGAAATGGCA CAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTT
genomic: TCTGCTTTTCAATTTCTGGGTTTTCAAGCTTCGTGTAGAAGGAAATGGCAgtaagtttta ... aatttggcagCAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTT
taacatttgaaacttgtatttattgaaatcacttttcaatgtgtcaatttggcagCAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTTCCTTATACAGCATATTTTGACAAGGCACGGAAAGGTCGAACTGGCACAA
tattaac putative branch site (score: 1)
ttgtatttattgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattaatgactctgattcttgattgagttggaataggagatttattaacatttgaaacttgtatttattgaaatcacttttcaatgtgtcaatttggcagCAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTTCCTTATACAGCATATTTTGACAAGGCACGGAAAGGTCGAACTGGCACAA
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