1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcatgctatgttattgtttaccatatttttagcttgtaattaattttagctagtattagttgaatgatgggtttactttgattctggttttgattctcagGTAGCTTTTCTTTGAAGAGAAAAGATAGTGACACAACAGTAGAGAGACGAGTTTATTGCTCTGCCGCTGCTCAATCACCACCACCAGCATGGCCAGGAAC
species | Glycine max |
transcript | GLYMA16G10880.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCACAACTTATAGTCGGTCATTTATATAATGTAAAATTAGTAAGGACAG GTAGCTTTTCTTTGAAGAGAAAAGATAGTGACACAACAGTAGAGAGACGAG
genomic: TTCACAACTTATAGTCGGTCATTTATATAATGTAAAATTAGTAAGGACAGgtatccaaat ... tgattctcagGTAGCTTTTCTTTGAAGAGAAAAGATAGTGACACAACAGTAGAGAGACGAG
ttagctagtattagttgaatgatgggtttactttgattctggttttgattctcagGTAGCTTTTCTTTGAAGAGAAAAGATAGTGACACAACAGTAGAGAGACGAGTTTATTGCTCTGCCGCTGCTCAATCACCACCACCAGCATGGCCAGGAAC
ttttgat putative branch site (score: 4)
ttctc CT-rich tract
tagtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgctatgttattgtttaccatatttttagcttgtaattaattttagctagtattagttgaatgatgggtttactttgattctggttttgattctcagGTAGCTTTTCTTTGAAGAGAAAAGATAGTGACACAACAGTAGAGAGACGAGTTTATTGCTCTGCCGCTGCTCAATCACCACCACCAGCATGGCCAGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
tcatgct
- - - - - - - - - - - - - - - -gcttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattctg