Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttccgcttcaatccatcaatttttatggttcctcttcgtcatttatgttttttttttttttgcgttctaacttttttgtttctgttccgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG

Basic information

species Glycine max
transcript GLYMA16G10750.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193542130|gb|FK496228.1|FK496228
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAA                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|298193329|gb|HO033763.1|HO033763
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|27423853|gb|CA935373.1|CA935373
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|298175734|gb|HO018331.1|HO018331
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|24135582|gb|BU926092.1|BU926092
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|27427266|gb|CA938786.1|CA938786
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|192324946|gb|FK016117.1|FK016117
EST:     CTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|192297771|gb|FG989977.1|FG989977
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|26267833|gb|CA818896.1|CA818896
EST:     GCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: GCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|298198249|gb|HO039788.1|HO039788
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTAACGGAGCTGCAAACTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|298170036|gb|HO018660.1|HO018660
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|192315333|gb|FK009625.1|FK009625
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|193634963|gb|FK585298.1|FK585298
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|14011654|gb|BG726576.1|BG726576
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|151407606|gb|EV277421.1|EV277421
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGCGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|298187400|gb|HO034549.1|HO034549
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|209726138|gb|BW675313.1|BW675313
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|208210805|gb|GE009122.1|GE009122
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCCTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|6747607|gb|AW318120.1|AW318120
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|193654297|gb|FK597411.1|FK597411
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|22526013|gb|BU084824.1|BU084824
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|208235723|gb|GE033745.1|GE033745
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCCTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|31461364|gb|CD403392.1|CD403392
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|7146975|gb|AW508897.1|AW508897
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|12774035|gb|BG238962.1|BG238962
EST:     GAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: GAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|207776702|gb|GD748764.1|GD748764
EST:     CTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|193523670|gb|FK480967.1|FK480967
EST:     CTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGACGTGAAG
genomic: CTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|193660662|gb|FK606386.1|FK606386
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|207767557|gb|GD739297.1|GD739297
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCCTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|38192531|gb|CF921737.1|CF921737
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|298162996|gb|HO011729.1|HO011729
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|192304037|gb|FG993881.1|FG993881
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|209700345|gb|BW664382.1|BW664382
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|209726139|gb|BW675314.1|BW675314
EST:     CGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|10845833|gb|BF068875.1|BF068875
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|27423836|gb|CA935356.1|CA935356
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|15203525|gb|BI426293.1|BI426293
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|193320679|gb|FK285640.1|FK285640
EST:     CATGAACGCTCCTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|208279290|gb|GE080805.1|GE080805
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|7589192|gb|AW704971.1|AW704971
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|11413630|gb|BF425641.1|BF425641
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|14990944|gb|BI316617.1|BI316617
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|17402092|gb|BM178874.1|BM178874
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|9899664|gb|BE608632.1|BE608632
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|31475040|gb|CD417068.1|CD417068
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|151402182|gb|EV271995.1|EV271995
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|298185920|gb|HO031081.1|HO031081
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGATGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|192325979|gb|FK016656.1|FK016656
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|213601554|gb|DB972346.1|DB972346
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|298166273|gb|HO009244.1|HO009244
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|9902932|gb|BE611900.1|BE611900
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|20498677|gb|BQ273607.1|BQ273607
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|38193858|gb|CF923064.1|CF923064
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|193635905|gb|FK582962.1|FK582962
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|193348861|gb|FK316985.1|FK316985
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAGG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|5509520|gb|AI856078.1|AI856078
EST:     CATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|254347228|gb|GR856898.1|GR856898
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|9901330|gb|BE610298.1|BE610298
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|14195946|gb|BE657760.2|BE657760
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|13481192|gb|BG510535.1|BG510535
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|208185008|gb|GD984980.1|GD984980
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|193465812|gb|FK433389.1|FK433389
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|207701587|gb|GD682916.1|GD682916
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|192295117|gb|FG986836.1|FG986836
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|192328912|gb|FK019667.1|FK019667
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|42722852|gb|CK768751.1|CK768751
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
EST: gi|13181466|gb|BG352806.1|BG352806
EST:     CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAG                         TTTCTGGCGAAGAAAACCTGGTGATGTGANCGGAGCTGCANAATTGGCGTG
genomic: CATGAACGCTCTTCCCATTCTCCTCTTCTTCCTCTTCGTTTCTGCATTAGgtattgtttg ... cgtgtttcagTTTCT-GCGAAGAAAA-CTGGTGATGTGA-CGGAGCTGCA-AATTGGCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgttttttttttttttgcgttctaacttttttgtttctgttccgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG
                      ttctaac  putative branch site (score: 1)
                            cttttttgtttctgtt  CT-rich tract
     tttttttttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attttccgcttcaatccatcaatttttatggttcctcttcgtcatttatgttttttttttttttgcgttctaacttttttgtttctgttccgtgtttcagTTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - -ccgcttc
- - - - - - - -ccatcaa
- - - - - - - - - - - - - - - - -cctcttc