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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttggcaatcttttagcttagcttgttctaatctcttgtttgttttgtttagctttatttattcaatggtttatttaattttttattttcttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAGATAGGGGAACTCCTTTCAGTTTCACGCTTGGACAAG

Basic information

species Glycine max
transcript GLYMA16G10730.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706890|gb|BW661500.1|BW661500
EST:     GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAG                         TTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
genomic: GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAGgtactctatg ... cttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
EST: gi|19452637|gb|BM954047.1|BM954047
EST:     GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAG                         TTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
genomic: GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAGgtactctatg ... cttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
EST: gi|23726218|gb|BU761093.1|BU761093
EST:     GATAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAG                         TTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
genomic: GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAGgtactctatg ... cttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
EST: gi|23731786|gb|BU764037.1|BU764037
EST:     GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAG                         TTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
genomic: GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAGgtactctatg ... cttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttagctttatttattcaatggtttatttaattttttattttcttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAGATAGGGGAACTCCTTTCAGTTTCACGCTTGGACAAG
                            atttaat  putative branch site (score: 4)
                         tttatttaatttttta  CT-rich tract
         tttatttattcaatgg  TA-rich tract