1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acttggcaatcttttagcttagcttgttctaatctcttgtttgttttgtttagctttatttattcaatggtttatttaattttttattttcttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAGATAGGGGAACTCCTTTCAGTTTCACGCTTGGACAAG
species | Glycine max |
transcript | GLYMA16G10730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAG TTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAGEST: gi|19452637|gb|BM954047.1|BM954047
genomic: GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAGgtactctatg ... cttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
EST: GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAG TTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAGEST: gi|23726218|gb|BU761093.1|BU761093
genomic: GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAGgtactctatg ... cttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
EST: GATAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAG TTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAGEST: gi|23731786|gb|BU764037.1|BU764037
genomic: GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAGgtactctatg ... cttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
EST: GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAG TTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
genomic: GAAAGAAGGTGAAGGATGGGACACCCCTGAAGCTGGTGACGAAGTTCAAGgtactctatg ... cttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAG
ttgtttagctttatttattcaatggtttatttaattttttattttcttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAGATAGGGGAACTCCTTTCAGTTTCACGCTTGGACAAG
atttaat putative branch site (score: 4)
tttatttaatttttta CT-rich tract
tttatttattcaatgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttggcaatcttttagcttagcttgttctaatctcttgtttgttttgtttagctttatttattcaatggtttatttaattttttattttcttttttcagTTCACTATACTGGGACGTTGCTTGATGGCACGAAGTTTGACTCTAGCAGAGATAGGGGAACTCCTTTCAGTTTCACGCTTGGACAAG
- - - - - - - - - - -gcttgtt
- - - - - - - - - - - - - - - - - - -tgtttgt