1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttagaaattaaattttaatttgcaactctattatacccatttttcaccatcttttctttatctctaatgcataagtatccttataatgtcttgtttgtagGCGTATGCGGCCACCCTTAACCAAACGCCTTCTGTTGTCATTCTTCTTTCTTGGATTGACTGG
species | Glycine max |
transcript | GLYMA16G08380.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACCTCATTGCCCTCGCCATTCTCGCTCCCCTCGCTTACATCCGCGAAAA GCGTATGCGGCCACCCTTAACCAAACGCCTTCTGTTGTCATTCTTCTTTCTEST: gi|192323502|gb|FK016393.1|FK016393
genomic: GACCTCATTGCCCTCGCCATTCTCGCTCCCCTCGCTTACATCCGCGAAAAgtaccattct ... ttgtttgtagGCGTATGCGGCCACCCTTAACCAAACGCCTTCTGTTGTCATTCTTCTTTCT
EST: GACCTCATTGCCCTCGCCATTCTCGCTCCCCTCGCTTACATCCGCGAAAA GCGTATGCGGCCACCCTTAACCAAACGCCTTCTGTTTGTCATTCTTCTTTC
genomic: GACCTCATTGCCCTCGCCATTCTCGCTCCCCTCGCTTACATCCGCGAAAAgtaccattct ... ttgtttgtagGCGTATGCGGCCACCCTTAACCAAACGCCTTCTGTT-GTCATTCTTCTTTC
accatcttttctttatctctaatgcataagtatccttataatgtcttgtttgtagGCGTATGCGGCCACCCTTAACCAAACGCCTTCTGTTGTCATTCTTCTTTCTTGGATTGACTGG
ctctaat putative branch site (score: 3)
tcttgttt putative PPT
ttttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagaaattaaattttaatttgcaactctattatacccatttttcaccatcttttctttatctctaatgcataagtatccttataatgtcttgtttgtagGCGTATGCGGCCACCCTTAACCAAACGCCTTCTGTTGTCATTCTTCTTTCTTGGATTGACTGG
- - aaattaaa
- - - - - - - - - - tgcaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcataa