Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcaactttagtactgaattggagatttcctgttttgtgattttgtgttttcacaattttacctgactctgttaacatgattcctaatcatcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGAATCTGACAAAGGAATTTTTTCACAGCTTGCTCATGGGGTAGCTGGTGCA

Basic information

species Glycine max
transcript GLYMA16G08360.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7232824|gb|AW568177.1|AW568177
EST:     TATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|7145785|gb|AW507707.1|AW507707
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|11688314|gb|BF595990.1|BF595990
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|23726620|gb|BU761309.1|BU761309
EST:     GCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: GCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298182935|gb|HO028148.1|HO028148
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298184216|gb|HO029429.1|HO029429
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAACACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|58016935|gb|CX703677.1|CX703677
EST:     GTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: GTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298194527|gb|HO042999.1|HO042999
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298190459|gb|HO032580.1|HO032580
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|5753561|gb|AI960848.1|AI960848
EST:     TTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|213602261|gb|DB958521.1|DB958521
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|7146678|gb|AW508600.1|AW508600
EST:     TTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|254328304|gb|GR835269.1|GR835269
EST:     GCAATTTCTCAA-TACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: GCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298194953|gb|HO043425.1|HO043425
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGC-AGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|213588479|gb|DB961596.1|DB961596
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|254328303|gb|GR835268.1|GR835268
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298195285|gb|HO043813.1|HO043813
EST:     ATTGCATTTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: ATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298164576|gb|HO014221.1|HO014221
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|208137871|gb|GD939333.1|GD939333
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|213601662|gb|DB972398.1|DB972398
EST:     ACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: ACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298189815|gb|HO038218.1|HO038218
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298199116|gb|HO042479.1|HO042479
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|254322223|gb|GR837637.1|GR837637
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|193462305|gb|FK428946.1|FK428946
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|16105373|gb|BI893113.1|BI893113
EST:     ACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: ACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|213587753|gb|DB955615.1|DB955615
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298177741|gb|HO023760.1|HO023760
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298186543|gb|HO037176.1|HO037176
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298184902|gb|HO030115.1|HO030115
EST:     TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCCGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298186941|gb|HO034040.1|HO034040
EST:     ACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: ACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|298177147|gb|HO027042.1|HO027042
EST:     TTCTATTGCAATTTCTCAAGTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
EST: gi|254322224|gb|GR837638.1|GR837638
EST:     TTCTA-TGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA
genomic: TTCTATTGCAATTTCTCAATTACTACATCGTATTCTGCAAATTCAAACTGgtgagttccc ... tcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttcacaattttacctgactctgttaacatgattcctaatcatcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGAATCTGACAAAGGAATTTTTTCACAGCTTGCTCATGGGGTAGCTGGTGCA
                                    tcctaat  putative branch site (score: 2)
       acaatttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgcaactttagtactgaattggagatttcctgttttgtgattttgtgttttcacaattttacctgactctgttaacatgattcctaatcatcatgatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCACCATGATGAATCTGACAAAGGAATTTTTTCACAGCTTGCTCATGGGGTAGCTGGTGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
tgcaact
- - - - - - - - - - - - - - cctgttt
- - - - - - - - - - - - - - - - ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattcc