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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaatttttgttgtgatatcatggaactttaattctccattgcttctatttttagtaatatttatataatatataataaattgaagcttaacgtgtcatgcagTTTGTTTGGATGGAAGTCCACCAGCTTACCACTTTGATAAGGGATTTGGAAAAGGGATTAACAACTGGATTGTTCACATTGAG

Basic information

species Glycine max
transcript GLYMA16G08230.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08230.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G19420.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagaaatttttgttgtgatatcatggaactttaattctccattgcttctatttttagtaatatttatataatatataataaattgaagcttaacgtgtcatgcagTTTGTTTGGATGGAAGTCCACCAGCTTACCACTTTGATAAGGGATTTGGAAAAGGGATTAACAACTGGATTGTTCACATTGAG
|||||  |||  |  |||    | ||  |   || ||||   |||| | |||| |    || | ||    |  | |||  |  ||  | |  |   | ||  |||||||||||| |||||||||||||||||||| || || ||||  || | |||||  || || || |  ||| |  | ||  |||||
gtgagttattaattctgt----ttatata---tttattcattattgttcctatatagtatatttttgtgtttttttattcttcatctatgtcttttg-gttttgcagTTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAACTGGAATCAATAGTTGGTTGATACAGCTTGAG

upper sequence: GLYMA16G08230.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 2
gtgagaaatttttgttgtgatatcatggaactttaattctccattgct--tctatttttagtaatatttatataatatataataaattgaagcttaacgtgtcatgcagTTTGTTTGGATGGAAGTCCACCAGCTTACCACTTTGATAAGGGATTTGGAAAAGGGATTAACAACTGGATTGTTCACATTGAG
|||| |||  ||  | |   |    |        || | |   ||  |  ||| || || |    |||  |||  | | | | || | ||   |   | | | |||||||||| |||||||| || ||||| ||||||||| | ||||||||||||||   |||||||||||| ||| | ||||| ||||||
gtgaaaaaccttgttagaattcgggttttttcccaaatttttgttcataatctgttgtttgattgattcttatg-tgtgtgaaaattcgacatt---cttattatgcagTTTGCTTGGATGGTAGCCCACCTGCTTACCACATGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttagtaatatttatataatatataataaattgaagcttaacgtgtcatgcagTTTGTTTGGATGGAAGTCCACCAGCTTACCACTTTGATAAGGGATTTGGAAAAGGGATTAACAACTGGATTGTTCACATTGAG
                                     gcttaac  putative branch site (score: 3)
     agtaatatttatataa  TA-rich tract