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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttgggtatattctacctttgttatttcttatagtatattgtttaatttaatttaactttcaatatttgattttttaaaaatttagTGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAGTTCCTATCTCATATACAACGCTTCTCTCTACTTCAGCTCTGCTATTCAG

Basic information

species Glycine max
transcript GLYMA16G07110.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294741|gb|FG986590.1|FG986590
EST:     TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAG                         TGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAA
genomic: TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAGgtaggttggg ... aaaaatttagTGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAG
EST: gi|192313595|gb|FK005591.1|FK005591
EST:     TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAG                         TGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAG
genomic: TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAGgtaggttggg ... aaaaatttagTGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAG
EST: gi|298197220|gb|HO041963.1|HO041963
EST:     TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAG                         TGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAG
genomic: TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAGgtaggttggg ... aaaaatttagTGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAG
EST: gi|151401800|gb|EV271613.1|EV271613
EST:     TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAG                         TGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAG
genomic: TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAGgtaggttggg ... aaaaatttagTGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAG
EST: gi|192306919|gb|FG999952.1|FG999952
EST:     TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAG                         TGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAG
genomic: TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAGgtaggttggg ... aaaaatttagTGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAG
EST: gi|192313596|gb|FK005592.1|FK005592
EST:     TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAG                         TGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAG
genomic: TGGTCCATCAGTTTCTATCCTCAAGTCATCTTGAATTTTCGCAGGAAGAGgtaggttggg ... aaaaatttagTGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtatattgtttaatttaatttaactttcaatatttgattttttaaaaatttagTGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAGTTCCTATCTCATATACAACGCTTCTCTCTACTTCAGCTCTGCTATTCAG
                                       tttttta  CT-rich tract
          tttaatttaatttaac  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggttgggtatattctacctttgttatttcttatagtatattgtttaatttaatttaactttcaatatttgattttttaaaaatttagTGTGGTTGGACTCAACTTCGATTTCGTGGTGCTAAATCTGACCAAGCACAGTTCCTATCTCATATACAACGCTTCTCTCTACTTCAGCTCTGCTATTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC