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...tctatatatttgtatcagtagaaccatttttttggatattagcttataatttgatactaaatagtaagtagatcacaccaattaccaatatatattgcagAGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCATATCGAGCGAAGATCTAGCTTCGGCTCTGAATCCCCCTTAGCAAGAGAG
species | Glycine max |
transcript | GLYMA16G06850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAAGACTCTCTTTTCTCTCTCTGAACTCTGAAGCAAAACAACATTACCAG AGTGGTTCTTGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCAEST: gi|11273943|gb|BF324331.1|BF324331
genomic: AAAGACTCTCTTTTCTCTCTCTGAACTCTGAAGCAAAACAACATTACCAGgtacagtttc ... tatattgcagAGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCA
EST: AAAGACTCTCTTTTCTCTCTCTGAACTCTGAAGCAAAACAACATTACCAG AGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCAEST: gi|254319052|gb|GR830508.1|GR830508
genomic: AAAGACTCTCTTTTCTCTCTCTGAACTCTGAAGCAAAACAACATTACCAGgtacagtttc ... tatattgcagAGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCA
EST: AAAGACTCTCTTTTCTCTCTCTGAACTCTGAAGCAAAACAACATTACCAG AGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCAEST: gi|213607767|gb|DB959106.1|DB959106
genomic: AAAGACTCTCTTTTCTCTCTCTGAACTCTGAAGCAAAACAACATTACCAGgtacagtttc ... tatattgcagAGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCA
EST: GAAGCAAAACAACATTACCAG AGTGGTTCTTGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCAEST: gi|213608230|gb|DB970827.1|DB970827
genomic: GAAGCAAAACAACATTACCAGgtacagtttc ... tatattgcagAGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCA
EST: GAAGGAAAACAACATTACCAG AGTGGTTCTTGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCAEST: gi|208305145|gb|GE102818.1|GE102818
genomic: GAAGCAAAACAACATTACCAGgtacagtttc ... tatattgcagAGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCA
EST: GAAGCAAAACAACATTACCAG AGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCA
genomic: GAAGCAAAACAACATTACCAGgtacagtttc ... tatattgcagAGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCA
ataatttgatactaaatagtaagtagatcacaccaattaccaatatatattgcagAGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCATATCGAGCGAAGATCTAGCTTCGGCTCTGAATCCCCCTTAGCAAGAGAG
tactaaa putative branch site (score: 1)
aattaccaatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatatatttgtatcagtagaaccatttttttggatattagcttataatttgatactaaatagtaagtagatcacaccaattaccaatatatattgcagAGTGGTTCTAGTAATTCAGTGCTGCTAGAAGATGGAAACTAGTGAATGGCATATCGAGCGAAGATCTAGCTTCGGCTCTGAATCCCCCTTAGCAAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA