1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcccccaattgcatgtttgctatgccctgtttcttgctgtatttttgtgttgatttacttctttaataaggtctatattgtgtttatgataacttgttagGGTTTCAAAAGATGGAGAACATGCAGAGCTTCTGGCAATTGGGCGATGAACTCCGTGGACACTCAAAAGCATCGGAGGATCACAAATGGTTAATGGTTGC
species | Glycine max |
transcript | GLYMA16G06100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCTCTTTCACTCGCGTCTTCGAGTTTCACAGCGAAGTTGTAGGAG GGTTTCAAAAGATGGAGAACATGCAGAGCTTCTGGCAATTGGGCGATGAACEST: gi|308098299|gb|HO760040.1|HO760040
genomic: TCTCTCTTTCACTCGCGTCTTCGAGTTTCACAGCGAAGTCGTAGGAGgtactctctc ... aacttgttagGGTTTCAAAAGATGGAGAACATGCAGAGCTTCTGGCAATTGGGCGATGAAC
EST: CGCGTCTTCGAGTTTCACAGCGAAGTCGTAGGAG GGTTTCAAAAGATGGAGAACATGCAGAGCTTCTGGCAATTGGGCGATGAAC
genomic: CGCGTCTTCGAGTTTCACAGCGAAGTCGTAGGAGgtactctctc ... aacttgttagGGTTTCAAAAGATGGAGAACATGCAGAGCTTCTGGCAATTGGGCGATGAAC
tgtgttgatttacttctttaataaggtctatattgtgtttatgataacttgttagGGTTTCAAAAGATGGAGAACATGCAGAGCTTCTGGCAATTGGGCGATGAACTCCGTGGACACTCAAAAGCATCGGAGGATCACAAATGGTTAATGGTTGC
tgataac putative branch site (score: 2)
atttacttctttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccccaattgcatgtttgctatgccctgtttcttgctgtatttttgtgttgatttacttctttaataaggtctatattgtgtttatgataacttgttagGGTTTCAAAAGATGGAGAACATGCAGAGCTTCTGGCAATTGGGCGATGAACTCCGTGGACACTCAAAAGCATCGGAGGATCACAAATGGTTAATGGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
tccccca
- - - - - gcatgtt
- - - - - - - - - -ctatgcc
- - - - - - - - - - - - - ctgtttc
- - - - - - - - - - - - - - - - - tgctgta
- - - - - - - - - - - - - - - - - - - - - ttttgtg