Sequence
atgc intronic sequence ATGC exonic sequence...atgattctattcttctgattgagaatggtgtgtaggatgttcggtatgtgttcttgactcccaaatgttgattgtgtgttataattgttttgaaatgcagGTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAGGTTGAAGATCACAAAGGCCAGTGGCTAAGTTGCTTTCCTGACAACTGCACATCACTTGTTTCACTT
Basic information
species | Glycine max |
transcript | GLYMA16G05500.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G05500.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0068g01330.t01 (Vitis vinifera), 3'ss of exon 2
--atgattctattcttctgattgagaatggtgtgtaggatgttcggtatgtgttcttgactcccaaatgttgat-tgtgtgttataattgttttgaaatgcagGTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAGGTTGAAGATCACAAAGGCCAGTGGCTAAGTTGCTTTCCTGACAACTGCACATCACTTGTTTCACTT
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tgaaaagaggggtgcttggacagtg---ggaatattatgggctagaaatgttgggctttggcatagatattaatgtatgcttcattttgtttctctaatctagGTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGGCCAATGGCTTAGCTGCTTCCCTGACAGCTGCACATCACTAGTCTCCTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7925574|gb|AW831600.1|AW831600EST: GGGTTCTCCACTGATGGCCTTGCTGCTTTAGCTGCAAATTGCAG GTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAGGTTGAAGATCACAAAGG
genomic: GGGTTCTCCACTGATGGCCTTGCTGCTTTAGCTGCAAATTGCAGgtgagaatga ... tgaaatgcagGTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAGGTTGAAGATCACAAAGG
EST:
gi|27808977|gb|CB063399.1|CB063399EST: TGTGAAGGGTTCTCCACTGATGGCCTTGCTGCTTTAGCTGCAAATTGCAG GTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAGGTTGAAGATCACAAAGG
genomic: TGTGAAGGGTTCTCCACTGATGGCCTTGCTGCTTTAGCTGCAAATTGCAGgtgagaatga ... tgaaatgcagGTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAGGTTGAAGATCACAAAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtgttcttgactcccaaatgttgattgtgtgttataattgttttgaaatgcagGTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAGGTTGAAGATCACAAAGGCCAGTGGCTAAGTTGCTTTCCTGACAACTGCACATCACTTGTTTCACTT
ttgtttt CT-rich tract
ttataattgttttgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgattctattcttctgattgagaatggtgtgtaggatgttcggtatgtgttcttgactcccaaatgttgattgtgtgttataattgttttgaaatgcagGTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAGGTTGAAGATCACAAAGGCCAGTGGCTAAGTTGCTTTCCTGACAACTGCACATCACTTGTTTCACTT
- - - - - tcttctg
- - - - - - - - - - - - -tggtgtg
- - - - - - - - - - - - - - - - - ggatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt