1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actaaacttttgaggacaaacatctgatgagaattgctagttgcaagagaatattatcagccatgtgattttaatcaatttttcttatgcattttaacagATGTATTCCCTATAGATGGACAAAGGACAACACAGATCAAATGGGGGAAACCCGGGAGATAATAGAAGTACTTATGGTTTCTTCACCAAAACGTGATGAC
species | Glycine max |
transcript | GLYMA16G05080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGGGCGACAAAGACAGCGTTATGAGGACAATTTGCGCCTTGTCTCTGG ATGTATTCCCTATAGATGGACAAAGGACAACACAGATCAAATGGGGGAAACEST: gi|19054175|gb|BM732842.1|BM732842
genomic: ACAGGGCGACAAAGACAGCGTTATGAGGACAATTTGCGCCTTGTCTCTGGgtaagctttt ... attttaacagATGTATTCCCTATAGATGGACAAAGGACAACACAGATCAAATGGGGGAAAC
EST: ACAGGGCGACAAAGACAGCGTTATGAGGACAATTTGCGCCTTGTCTCTGG ATGTATTCCCTATAGATGGACAAAGGACAACACAGATCAAATGGGGGAAAC
genomic: ACAGGGCGACAAAGACAGCGTTATGAGGACAATTTGCGCCTTGTCTCTGGgtaagctttt ... attttaacagATGTATTCCCTATAGATGGACAAAGGACAACACAGATCAAATGGGGGAAAC
agagaatattatcagccatgtgattttaatcaatttttcttatgcattttaacagATGTATTCCCTATAGATGGACAAAGGACAACACAGATCAAATGGGGGAAACCCGGGAGATAATAGAAGTACTTATGGTTTCTTCACCAAAACGTGATGAC
ttttaat putative branch site (score: 3)
attttaatcaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaaacttttgaggacaaacatctgatgagaattgctagttgcaagagaatattatcagccatgtgattttaatcaatttttcttatgcattttaacagATGTATTCCCTATAGATGGACAAAGGACAACACAGATCAAATGGGGGAAACCCGGGAGATAATAGAAGTACTTATGGTTTCTTCACCAAAACGTGATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - caaacat
- - - - - - - - - - - -ctgatga
- - - - - - - - - - - - - - - - -ttgctag
- - - - - - - - - - - - - - - - - - - - -tgcaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcagcca