1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtaatatattacctcttctccacatcacaccacatacatgtagaatacaacaaacaagtttatgaaaacatcccttattatatatttagttgttaacttgggtatgttaatttttcatgtttcatacaattttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAACATAAAGATGGTTCCTGGCGATTCAGCTGGCACAGTCACTGCTTTTTA
species | Glycine max |
transcript | GLYMA16G04960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAEST: gi|192323920|gb|FK015671.1|FK015671
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAEST: gi|9203732|gb|BE329956.1|BE329956
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAEST: gi|192296733|gb|FG993031.1|FG993031
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAEST: gi|192308008|gb|FG998991.1|FG998991
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAEST: gi|21677268|gb|BQ629619.1|BQ629619
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAEST: gi|9898982|gb|BE607950.1|BE607950
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAEST: gi|18734985|gb|BM528499.1|BM528499
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAEST: gi|192307523|gb|FK002041.1|FK002041
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAEST: gi|192327911|gb|FK022456.1|FK022456
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAEST: gi|192296130|gb|FG989490.1|FG989490
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAEST: gi|192324285|gb|FK018261.1|FK018261
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
tttagttgttaacttgggtatgttaatttttcatgtttcatacaattttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAACATAAAGATGGTTCCTGGCGATTCAGCTGGCACAGTCACTGCTTTTTA
ttttcatt CT-rich tract
ttaatttttcatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtaatatattacctcttctccacatcacaccacatacatgtagaatacaacaaacaagtttatgaaaacatcccttattatatatttagttgttaacttgggtatgttaatttttcatgtttcatacaattttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAACATAAAGATGGTTCCTGGCGATTCAGCTGGCACAGTCACTGCTTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG