1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaattacggtcgcagttaaaaaaatctttatattactgttcaagtgcagaccaccatttttaaaacttcttacttaccgtcttcgttattctgctgtagATCACACCCGGTTTAAGTGCTTACGAGGATGATCCCGAGCAAGCTGCAGAATCTCTGATTCCACTTTTGGAGGAAGCAGAAAGTGTAGTTCCTGAGGACT
species | Glycine max |
transcript | GLYMA16G04760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAATTTGGATCTCCTTCCCATTGGTGATAGTCTTGAGCTTAATAAAAAG ATCACACCCGGTTTAAGTGCTTACGAGGATGATCCCGAGCAAGCTGCAGAAEST: gi|151400776|gb|EV270590.1|EV270590
genomic: AGAATTTGGATCTCCTTCCCATTGGTGATAGTCTTGAGCTTAATAAAAAGgtatatatgt ... tctgctgtagATCACACCCGGTTTAAGTGCTTACGAGGATGATCCCGAGCAAGCTGCAGAA
EST: AGAATTTGGACCTCCTTCCCATTGGTGATAGTCTTGAGCTTAGTAAAAAG ATCACACCCGGTTTAAGTGCTTACGAGGATGATCCCGAGCAAGCTGCAGAAEST: gi|213590175|gb|DB963794.1|DB963794
genomic: AGAATTTGGATCTCCTTCCCATTGGTGATAGTCTTGAGCTTAATAAAAAGgtatatatgt ... tctgctgtagATCACACCCGGTTTAAGTGCTTACGAGGATGATCCCGAGCAAGCTGCAGAA
EST: AGAATTTGGATCTCCTTCCCATTGGTGATAGTCTTGAGCTTAATAAAAAG ATCACACCCGGTTTAAGTGCTTACGAGGATGATCCCGAGCAAGCTGCAGAAEST: gi|20448957|gb|BQ253081.1|BQ253081
genomic: AGAATTTGGATCTCCTTCCCATTGGTGATAGTCTTGAGCTTAATAAAAAGgtatatatgt ... tctgctgtagATCACACCCGGTTTAAGTGCTTACGAGGATGATCCCGAGCAAGCTGCAGAA
EST: AGAATTTGGATCTCCTTCCCATTGGTGATAGTCTTGAGCTTAATAAAAAG ATCACACCCGGTTTAAGTGCTTACGAGGATGATCCCGAGCAAGCTGCAGAA
genomic: AGAATTTGGATCTCCTTCCCATTGGTGATAGTCTTGAGCTTAATAAAAAGgtatatatgt ... tctgctgtagATCACACCCGGTTTAAGTGCTTACGAGGATGATCCCGAGCAAGCTGCAGAA
tgcagaccaccatttttaaaacttcttacttaccgtcttcgttattctgctgtagATCACACCCGGTTTAAGTGCTTACGAGGATGATCCCGAGCAAGCTGCAGAATCTCTGATTCCACTTTTGGAGGAAGCAGAAAGTGTAGTTCCTGAGGACT
tacttac putative branch site (score: 1)
ttattct putative PPT
atttttaaaacttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaattacggtcgcagttaaaaaaatctttatattactgttcaagtgcagaccaccatttttaaaacttcttacttaccgtcttcgttattctgctgtagATCACACCCGGTTTAAGTGCTTACGAGGATGATCCCGAGCAAGCTGCAGAATCTCTGATTCCACTTTTGGAGGAAGCAGAAAGTGTAGTTCCTGAGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - -caagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - -ccaccat