1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatccctaacccttctctcaaccatgtttccctcttcttcttactcttgatttggtttcgatattgtttttcagTTGGTGTTGCTTATATCATATATAGTTAAGCTTAACAACCTCCATTCAAAGTTAAAGATGCCTCGTACCAGCACTCTGGAGTGCTCCGGTTGCCCTCCGC
species | Glycine max |
transcript | GLYMA16G03840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTGAAAGTGATCGACTAATAGCGCCGCAATTCGCTGCTCCTTCT TGGGTGTTGCTTATATCATATATAGTTAAGCTTAACAACCTCCATTCAAAGEST: gi|5753628|gb|AI960915.1|AI960915
genomic: ATTGAAAGTGATCGACTAATAGCGCCGCAATTCGCTGCTCCTTCTgtaatcccta ... tgtttttcagTTGGTGTTGCTTATATCATATATAGTTAAGCTTAACAACCTCCATTCAAAG
EST: AAAATATTGAAAGTGATCGACTAATAGCGCCGCAATTCGCTGCTCCTTCT TTGGTGTTGCTTATATCATATATAGTTAAGCTTAACAACCTCCATTCAAAGEST: gi|208152635|gb|GD949572.1|GD949572
genomic: AAAATATTGAAAGTGATCGACTAATAGCGCCGCAATTCGCTGCTCCTTCTgtaatcccta ... tgtttttcagTTGGTGTTGCTTATATCATATATAGTTAAGCTTAACAACCTCCATTCAAAG
EST: ATTGAAAGTGATCGACTAATAGCGCCGCAATTCGCTGCTCCTTCT TTGGTGTTGCTTATATCATATATAGTTAAGCTTAACAACCTCCATTCAAAGEST: gi|213616958|gb|DB959270.1|DB959270
genomic: ATTGAAAGTGATCGACTAATAGCGCCGCAATTCGCTGCTCCTTCTgtaatcccta ... tgtttttcagTTGGTGTTGCTTATATCATATATAGTTAAGCTTAACAACCTCCATTCAAAG
EST: GATCTACTAATAGCGCCGCAATTCGCTGCTCCTTCT TTGGTGTTGCTTATATCATATATAGTTAAGCTTAACAACCTCCATTCAAAG
genomic: GATCGACTAATAGCGCCGCAATTCGCTGCTCCTTCTgtaatcccta ... tgtttttcagTTGGTGTTGCTTATATCATATATAGTTAAGCTTAACAACCTCCATTCAAAG
aaccatgtttccctcttcttcttactcttgatttggtttcgatattgtttttcagTTGGTGTTGCTTATATCATATATAGTTAAGCTTAACAACCTCCATTCAAAGTTAAAGATGCCTCGTACCAGCACTCTGGAGTGCTCCGGTTGCCCTCCGC
ttgtttttc CT-rich tract
atattgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatccctaacccttctctcaaccatgtttccctcttcttcttactcttgatttggtttcgatattgtttttcagTTGGTGTTGCTTATATCATATATAGTTAAGCTTAACAACCTCCATTCAAAGTTAAAGATGCCTCGTACCAGCACTCTGGAGTGCTCCGGTTGCCCTCCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG