1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtgcgcttcttcttttttgacgtgtttgattgcttcttctaatgcttgagttttaacctaaaatctgtgaacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCAAGTTCAAGAGAAGAAGAG
species | Glycine max |
transcript | GLYMA16G03170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|192315894|gb|FK008595.1|FK008595
genomic: AGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|298198310|gb|HO039849.1|HO039849
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|15336852|gb|BI497508.1|BI497508
genomic: TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: GAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|4397465|gb|AI496462.1|AI496462
genomic: GAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: GCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|19268986|gb|BM885242.1|BM885242
genomic: GCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: CTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|192308475|gb|FK001377.1|FK001377
genomic: CTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACGGAAATCAAAAGCCTACTTCAAGAGGTATCGAGTCEST: gi|209701098|gb|BW664200.1|BW664200
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|192317627|gb|FK007581.1|FK007581
genomic: TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|7233168|gb|AW568517.1|AW568517
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: AAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|151393465|gb|EV263340.1|EV263340
genomic: AAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|7284984|gb|AW597471.1|AW597471
genomic: TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: AGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|15814259|gb|BI786534.1|BI786534
genomic: AGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: GAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|192315893|gb|FK008594.1|FK008594
genomic: GAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|151412354|gb|EV282166.1|EV282166
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGCCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|42722855|gb|CK768754.1|CK768754
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: GGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCEST: gi|192317628|gb|FK007582.1|FK007582
genomic: GGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
tttgattgcttcttctaatgcttgagttttaacctaaaatctgtgaacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCAAGTTCAAGAGAAGAAGAG
ttttaacctaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgcgcttcttcttttttgacgtgtttgattgcttcttctaatgcttgagttttaacctaaaatctgtgaacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCAAGTTCAAGAGAAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG