1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tggatctgataatgcaaaacattatggatgatccaatttcggattgacattattgttttcatggtttattacttaatggtattctctttactcaatgtagTTATTGCAGTTCCGGATGGATTAAAGGCATGGGAAACATTGAAGAAGAAGGCATCTGAGCTAGATCTCATATTAACAGAAGTGGAGCTACCAGCAATATC
species | Glycine max |
transcript | GLYMA16G02050.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCACGCGCCAAATCATCGCCGCGCTTCTTCGCAAATGCA-TTA----- TT---GCAGTTCCGGATGGATTAAAGGCATGGGAAACATTGAAGAAGAAGGEST: gi|213589805|gb|DB959416.1|DB959416
genomic: TTCCACGCGCCAAATCATCGCCGCGCTTCTTCGCAAATGCAGTTACACGGgtttttttct ... ctcaatgtagTTATTGCAGTTCCGGATGGATTAAAGGCATGGGAAACATTGAAGAAGAAGG
EST: TTCCACGCGCCAAATCATCGCCGCGCTTCTTCGCAAATGCAGTTACACGG TTATTGCAGTTCCGGATGGATTAAAGGCATGGGAAACATTGAAEST: gi|209700772|gb|BW661229.1|BW661229
genomic: TTCCACGCGCCAAATCATCGCCGCGCTTCTTCGCAAATGCAGTTACACGGgtttttttct ... ctcaatgtagTTATTGCAGTTCCGGATGGATTAAAGGCATGGGAAACATTGAA
EST: TTCCACGCGCCAAATCATCGCCGCGCTTCTTCGCAAATGCAGTTACACGG TTATTGCAGTTCCGGATGGATTAAAGGCATGGGAAACATTGAAGAAGAAGG
genomic: TTCCACGCGCCAAATCATCGCCGCGCTTCTTCGCAAATGCAGTTACACGGgtttttttct ... ctcaatgtagTTATTGCAGTTCCGGATGGATTAAAGGCATGGGAAACATTGAAGAAGAAGG
gacattattgttttcatggtttattacttaatggtattctctttactcaatgtagTTATTGCAGTTCCGGATGGATTAAAGGCATGGGAAACATTGAAGAAGAAGGCATCTGAGCTAGATCTCATATTAACAGAAGTGGAGCTACCAGCAATATC
tattctctttactc CT-rich tract
tttattacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggatctgataatgcaaaacattatggatgatccaatttcggattgacattattgttttcatggtttattacttaatggtattctctttactcaatgtagTTATTGCAGTTCCGGATGGATTAAAGGCATGGGAAACATTGAAGAAGAAGGCATCTGAGCTAGATCTCATATTAACAGAAGTGGAGCTACCAGCAATATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT