1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcagtcattcacttcaaatttatcttcatttcttctttttcccttttacaaaatattgccctaacttttctttcttcttaaattccacctttttttcctaccctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG
species | Glycine max |
transcript | GLYMA16G00400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGATAGA GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGEST: gi|209717538|gb|BW679672.1|BW679672
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGATAGA GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGEST: gi|26047783|gb|CA784461.1|CA784461
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: CTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGA GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGEST: gi|26048721|gb|CA785174.1|CA785174
genomic: CTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGA GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGEST: gi|4295066|gb|AI442280.1|AI442280
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGA GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGEST: gi|209719804|gb|BW674956.1|BW674956
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGATAGA GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGEST: gi|20813050|gb|BQ297528.1|BQ297528
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGATAGA GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGEST: gi|151403853|gb|EV273663.1|EV273663
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGA GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
attgccctaacttttctttcttcttaaattccacctttttttcctaccctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG
ccctaac putative branch site (score: 2)
cttttctttcttctta CT-rich tract
tttcttcttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtcattcacttcaaatttatcttcatttcttctttttcccttttacaaaatattgccctaacttttctttcttcttaaattccacctttttttcctaccctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG