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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttattttggggaaaatttcttttttatatagcttgtatattatacctctttggagctatctctaattctcttcctctttccatttccctagAGACAATGCTTGCCTTTTGGAAGTGAGGCATTGCCTGAAGGAATTATTGCTAGAACATCTAACTTGGAAATGCGGCCCTTATGGGACTCTGGTAAAGATA

Basic information

species Glycine max
transcript GLYMA16G00290.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00290.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0035g01350.t01 (Vitis vinifera), 3'ss of exon 3
--------gtttgt----tattttggggaaaatttcttttttatatagcttgtatattatacctctttggagctatctctaattctcttcctctttccatttccctagAGACAATGCTTGCCTTTTGGAAGTGAGGCATTGCCTGAAGGAATTATTGCTAGAACATCTAACTTGGAAATGCGGCCCTTATGGGACTCTGGTAAAGATA
         |||      ||| ||||   | |  |    || | |||   | | |  | |  ||||||  |||  | | |  ||   |   | ||||  ||  | ||||  || |||  ||| | ||| |||||||||||||| ||||||||| |||  |  ||||||||| ||||| ||| |||||||||||   |   |    || 
gtttgtctatttagaacatatattggcatataacttcacttgaaatattctctct-ctctctctcttttaagccttttgtg-tttattctttttttcttttctcttagAACCAGTGCAGGCCATCTGGGAGTGAGGCATTGCCAGAAGGAATTGTTGTCAAGACATCTAACCTGGAAGTGCAGCCCTTATGGGGTGCCACTCTGAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattatacctctttggagctatctctaattctcttcctctttccatttccctagAGACAATGCTTGCCTTTTGGAAGTGAGGCATTGCCTGAAGGAATTATTGCTAGAACATCTAACTTGGAAATGCGGCCCTTATGGGACTCTGGTAAAGATA
                       ctctaat  putative branch site (score: 3)
                   ctatctctaattctct  CT-rich tract
                        tctaatt  TA-rich tract