1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtatgtacgttttgcctttacctattattgtctcgctaatgcattgcattgcagGGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTCTCCCCGAAGACTGGTCCTTCACTTTTTACGAAGGCATTAATAGACATCC
species | Glycine max |
transcript | GLYMA16G00210.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAAACCTACCATTTTCGCATCGAAGATGTTTCCTTGGGCCAATACGAGG GGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTCEST: gi|213616608|gb|DB967552.1|DB967552
genomic: TGAAACCTACCATTTTCGCATCGAAGATGTTTCCTTGGGCCAATACGAGGgtatgtatgt ... tgcattgcagGGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTC
EST: TGAAACCTACCATTTTCGCATCGAAGATGTTTCCTTGGGCCAATACGAGG GGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTCEST: gi|213618308|gb|DB961388.1|DB961388
genomic: TGAAACCTACCATTTTCGCATCGAAGATGTTTCCTTGGGCCAATACGAGGgtatgtatgt ... tgcattgcagGGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTC
EST: TGAAACCTACCATTTTCGCATCGAAGATGTTTCCTTGGGCCAATACGAGG GGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTCEST: gi|213607670|gb|DB958689.1|DB958689
genomic: TGAAACCTACCATTTTCGCATCGAAGATGTTTCCTTGGGCCAATACGAGGgtatgtatgt ... tgcattgcagGGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTC
EST: TGAAACCTACCATTTTCGCATCGAAGATGTTTCCTTGGGCCAATACGAGG GGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTCEST: gi|213593819|gb|DB957939.1|DB957939
genomic: TGAAACCTACCATTTTCGCATCGAAGATGTTTCCTTGGGCCAATACGAGGgtatgtatgt ... tgcattgcagGGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTC
EST: TGAAACCTACCATTTTCGCATCGAAGATGTTTCCTTGGGCCAATACGAGG GGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTC
genomic: TGAAACCTACCATTTTCGCATCGAAGATGTTTCCTTGGGCCAATACGAGGgtatgtatgt ... tgcattgcagGGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTC
tgtatgtacgttttgcctttacctattattgtctcgctaatgcattgcattgcagGGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTCTCCCCGAAGACTGGTCCTTCACTTTTTACGAAGGCATTAATAGACATCC
cgctaat putative branch site (score: 3)
tattattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatgtacgttttgcctttacctattattgtctcgctaatgcattgcattgcagGGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTCTCCCCGAAGACTGGTCCTTCACTTTTTACGAAGGCATTAATAGACATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA