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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcaaccctctttctctatcttgcggcttgattgatttgtcattaattattcaacttcgatttttaagacaatttctgtgtcaacctagattgaacacttttttcggatttttgttttgttttgttttgtttcattgatttattttggggtgaatcttagATATACGAAGGAATGTGCCAATGGGGTTATAGGACATTGAGTTCAGGTCTTTGTAATCCATCCAGAGTTATTGGGAACTTATCTCCAAATG

Basic information

species Glycine max
transcript GLYMA15G42640.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039956|gb|BM308250.1|BM308250
EST:     GGCTCCTTCGATCGCTGCCCGAAAAACTCCTCCGCCACGCCAACGAACGC                         ATATACGAAGGAATGTGCCAATGGGGTTATAGGACATTGAGTTCAGGTCTT
genomic: GGCTCCTTCGATCGCTGCCCGAAAAACTCCTCCGCCACGCCAACGAACGCgtactcaacc ... tgaatcttagATATACGAAGGAATGTGCCAATGGGGTTATAGGACATTGAGTTCAGGTCTT
EST: gi|208219752|gb|GE016678.1|GE016678
EST:     GGCTCCTTCGATCGCTGCCCGAAAAACTCCTCCGCCACGCCAACGAACGC                         ATATACGAAGGAATGTGCCAATGGGGTTATAGGACATTGAGTTCAGGTCTT
genomic: GGCTCCTTCGATCGCTGCCCGAAAAACTCCTCCGCCACGCCAACGAACGCgtactcaacc ... tgaatcttagATATACGAAGGAATGTGCCAATGGGGTTATAGGACATTGAGTTCAGGTCTT
EST: gi|9257966|gb|BE346175.1|BE346175
EST:     GGCTCCTTCGATCGCTGCCCGAAAAACTCCTCCGCCACGCCAACGAACGC                         ATATACGAAGGAATGTGCCAATGGGGTTATAGGACATTGAGTTCAGGTCTT
genomic: GGCTCCTTCGATCGCTGCCCGAAAAACTCCTCCGCCACGCCAACGAACGCgtactcaacc ... tgaatcttagATATACGAAGGAATGTGCCAATGGGGTTATAGGACATTGAGTTCAGGTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatttttgttttgttttgttttgtttcattgatttattttggggtgaatcttagATATACGAAGGAATGTGCCAATGGGGTTATAGGACATTGAGTTCAGGTCTTTGTAATCCATCCAGAGTTATTGGGAACTTATCTCCAAATG
                           cattgat  putative branch site (score: 4)
              ttttgttttgtttcat  TA-rich tract