1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgatatgtggaaaatttcaaatttgtatcttactagtcagccagtgcaacatgctcatgtaactcgaataataattttgttgtgtgttttatttctcagGTTACAGAATCCACCAATTTCAGTGAGCTAGCAGAGAAGGAACCCTGGCTTTTATCTTCAAAATTGGTTGTGAAACCAGACATGTTATTTGGAAAGCGTG
species | Glycine max |
transcript | GLYMA15G42140.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCACTTTAAGAGAATCTCTGGCCAGGAGTTGCCCATCAAGTCTGCACAG GTTACAGAATCCACCAATTTCAGTGAGCTAGCAGAGAAGGAACCCTGGCTTEST: gi|7587940|gb|AW703746.1|AW703746
genomic: AGCACTTTAAGAGAATCTCTGGCCAGGAGTTGCCCATCAAGTCTGCACAGgtatgcattc ... tatttctcagGTTACAGAATCCACCAATTTCAGTGAGCTAGCAGAGAAGGAACCCTGGCTT
EST: AGCACTTTAAGAGAATCTCTGGCCAGGAGTTGCCCATCAAGTCTGCACAG GTTACAGAATCCACCAATTTCAGTGAGCTAGCAGAGAAGGAACCCTGGCTT
genomic: AGCACTTTAAGAGAATCTCTGGCCAGGAGTTGCCCATCAAGTCTGCACAGgtatgcattc ... tatttctcagGTTACAGAATCCACCAATTTCAGTGAGCTAGCAGAGAAGGAACCCTGGCTT
tgcaacatgctcatgtaactcgaataataattttgttgtgtgttttatttctcagGTTACAGAATCCACCAATTTCAGTGAGCTAGCAGAGAAGGAACCCTGGCTTTTATCTTCAAAATTGGTTGTGAAACCAGACATGTTATTTGGAAAGCGTG
atgtaac putative branch site (score: 3)
ttttatttctc putative PPT
aataataattttgttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatatgtggaaaatttcaaatttgtatcttactagtcagccagtgcaacatgctcatgtaactcgaataataattttgttgtgtgttttatttctcagGTTACAGAATCCACCAATTTCAGTGAGCTAGCAGAGAAGGAACCCTGGCTTTTATCTTCAAAATTGGTTGTGAAACCAGACATGTTATTTGGAAAGCGTG
-tgatatg
- - - - - - - - - - - - - - - - - - -tcagcca
- - - - - - - - - - - - - - - - - - - - - - - - - catgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtt