Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atccccttttctccttcaataactccttttctttttctatatttttgttgcctgcatgataccttgctatttagctaacgttggtgttttaatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG

Basic information

species Glycine max
transcript GLYMA15G40860.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701700|gb|BW673147.1|BW673147
EST:     TCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAG                         CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
genomic: TCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAGgtttggttcc ... aatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
EST: gi|209720081|gb|BW659468.1|BW659468
EST:     CGGAAGCACTACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAG                         CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
genomic: CGGAAGCACTACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAGgtttggttcc ... aatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
EST: gi|209721069|gb|BW666330.1|BW666330
EST:     GCCGCTTGCTCGCTCTCTCTCGCTCTTTCAG                         CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
genomic: GCCGCTTGCTCGCTCTCTCTCGCTCTTTCAGgtttggttcc ... aatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
EST: gi|213591384|gb|DB959898.1|DB959898
EST:     ACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAG                         CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
genomic: ACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAGgtttggttcc ... aatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
EST: gi|193579539|gb|FK537680.1|FK537680
EST:     CGGAAGCACTACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAG                         CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
genomic: CGGAAGCACTACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAGgtttggttcc ... aatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
EST: gi|213593027|gb|DB973500.1|DB973500
EST:     CGGAAGCACTACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAG                         CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
genomic: CGGAAGCACTACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAGgtttggttcc ... aatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
EST: gi|213614873|gb|DB956981.1|DB956981
EST:     CGGAAGCACTACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAG                         CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
genomic: CGGAAGCACTACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAGgtttggttcc ... aatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
EST: gi|209719269|gb|BW679811.1|BW679811
EST:     ACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAG                         CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
genomic: ACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAGgtttggttcc ... aatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
EST: gi|298170535|gb|HO019159.1|HO019159
EST:     CGGAAGCACTACTCTCTTCGCCGCTTGCT--CTCTCTCTCGCTCTTTCAG                         CTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
genomic: CGGAAGCACTACTCTCTTCGCCGCTTGCTCGCTCTCTCTCGCTCTTTCAGgtttggttcc ... aatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcctgcatgataccttgctatttagctaacgttggtgttttaatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG
                                         ttttaatgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atccccttttctccttcaataactccttttctttttctatatttttgttgcctgcatgataccttgctatttagctaacgttggtgttttaatgtttcagCTTTGACTTTGGTGGAAACTAAAGACTAGTCAAAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-tcccctt
- - - - - ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtg