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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgatatagtttttttcttcttggtttgtttttctccccgtatagaaaacttaagctatgtattatatgcagGTGAAGTTCACAACTCACAGGCTTCGGCACATAATGGACTGCAAACACAATATTCGTAACATGTCTGTTATTGCACACGTCAATCATG

Basic information

species Glycine max
transcript GLYMA15G40850.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40850.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S431_2V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------gtgagtt--gatatagtttttttcttcttggtttgtttttc-tccccgtatagaaaacttaagctatgtattatatgcagGTGAAGTTCACAACTCACAGGCTTCGGCACATAATGGACTGCAAACACAATATTCGTAACATGTCTGTTATTGCACACGTCAATCATG
                       |  |||  |  ||  | ||||     | ||||    ||   |  |||  ||        |   | |||  | |  ||||||||||||  || || |   ||| ||    || ||||||   || ||||||||||||||||||||||| ||||| |||||  | || |
gcgaacactacgtcattcggaccttggttccggaatcatattttcgaattcggttgaaattgagtgtccgcttatgctgtcgagagtgtgtgctct--gcagGTGAAGTTTTCAGCTGAGGAGCTCCGTGCTATTATGGACAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttggtttgtttttctccccgtatagaaaacttaagctatgtattatatgcagGTGAAGTTCACAACTCACAGGCTTCGGCACATAATGGACTGCAAACACAATATTCGTAACATGTCTGTTATTGCACACGTCAATCATG
                       tatagaaaacttaa  TA-rich tract