1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gagttgtggcatcatatttttgctctacctgattttagctgtttctcaatgtgtacatttgcattgtttaattgatattttgacactgaagcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCCTGGACTTGAATCTCTTGTAGATC
species | Glycine max |
transcript | GLYMA15G40590.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAG GTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCEST: gi|308098199|gb|HO761370.1|HO761370
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGC
EST: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAG GTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCEST: gi|193342368|gb|FK307258.1|FK307258
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGC
EST: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAG GTGCAAGGATAAGTGTGTGATCTATCTATAAACGEST: gi|151399825|gb|EV269696.1|EV269696
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACG
EST: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAG GTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCEST: gi|298199205|gb|HO042568.1|HO042568
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGC
EST: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAG GTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCEST: gi|192300037|gb|FG992190.1|FG992190
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGC
EST: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAG GTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCEST: gi|151395293|gb|EV265164.1|EV265164
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGC
EST: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAG GTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCEST: gi|308098933|gb|HO760774.1|HO760774
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGC
EST: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAG GTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCEST: gi|192310889|gb|FG998893.1|FG998893
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGC
EST: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAG GTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGC
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGC
tcaatgtgtacatttgcattgtttaattgatattttgacactgaagcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCCTGGACTTGAATCTCTTGTAGATC
ttttgac putative branch site (score: 3)
cttctac putative PPT
attgtttaattgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagttgtggcatcatatttttgctctacctgattttagctgtttctcaatgtgtacatttgcattgtttaattgatattttgacactgaagcttctacagGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCCTGGACTTGAATCTCTTGTAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- gttgtgg
- - - - - - - - - - - ctctacc
- - - - - - - - - - - - - - - - - - - - - - - - -tgtgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgaa