Sequence
atgc intronic sequence ATGC exonic sequence...actagaacacaaaacataccacattattttagcaatgatatatgtaattgaagcacgagattcttaatcataacaatattgtattgtaatggttgtgcagAAACAGCTTGTGTGGGAGGGAAGGAGTGGTATTTCTATACACAAAGAGACCGTAAGTATGCAACAGGGCTACGCACAAATCGTGCCACTGCTTCAGGGTA
Basic information
species | Glycine max |
transcript | GLYMA15G40510.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G40510.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G56010.2 (Arabidopsis thaliana), 3'ss of exon 1
---actagaacacaaaacataccacattattttagcaatgatatatgtaattgaagcacgagattcttaatcataacaatat-tgtattgtaa-tggttgtgcagAAACAGCTTGTGTGGGAGGGAAGGAGTGGTATTTCTATACACAAAGAGACCGTAAGTATGCAACAGGGCTACGCACAAATCGTGCCACTGCTTCAGGGTA
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aaagttggcgctaacatttaatcacatgatcagtttcattat-cctgtagt----gtataatacaactaagcgtgtttgtgtgtatgtttcaaacaaatgattagAAATGGCATGCGTGGGAGGGAAGGATTGGTATTTCTACAGCCAAAGAGACCGAAAATACGCGACGGGGCTGAGAACTAACCGAGCAACGGCCACCGGATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19346934|gb|BM891745.1|BM891745EST: GGGATATTCCTG AAACAGCTTGTGTGGGAGGGAAGGAGTGGTATTTCTATACACAAAGAGACC
genomic: GGGATATTCCTGgtgagcaata ... ggttgtgcagAAACAGCTTGTGTGGGAGGGAAGGAGTGGTATTTCTATACACAAAGAGACC
EST:
gi|22522934|gb|BU081745.1|BU081745EST: TCTCATGATAAACGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTG AAACAGCTTGTGTGGGAGGGAAGGAGTGGTATTTCTATACACAAAGAGACC
genomic: TCTCATGATAAACGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGgtgagcaata ... ggttgtgcagAAACAGCTTGTGTGGGAGGGAAGGAGTGGTATTTCTATACACAAAGAGACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattgaagcacgagattcttaatcataacaatattgtattgtaatggttgtgcagAAACAGCTTGTGTGGGAGGGAAGGAGTGGTATTTCTATACACAAAGAGACCGTAAGTATGCAACAGGGCTACGCACAAATCGTGCCACTGCTTCAGGGTA
tcataac putative branch site (score: 2)
ttaatcataacaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actagaacacaaaacataccacattattttagcaatgatatatgtaattgaagcacgagattcttaatcataacaatattgtattgtaatggttgtgcagAAACAGCTTGTGTGGGAGGGAAGGAGTGGTATTTCTATACACAAAGAGACCGTAAGTATGCAACAGGGCTACGCACAAATCGTGCCACTGCTTCAGGGTA
- - - acacaaa
- - - - - - - catacca
- - - - - - - - - - - - - - - agcaatg