1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttagtttggtaattggatgcgttgaatgaaacttcgttagttcttctgctgaagaagtgagaaacatgtattctgatgaagaggtgtttgtttattcagAGTAGAGTTTGTTCATTGAAGAACTGAGGGAGGTTCAAGTCCATGATACTTTGAAATCTGTCTGTAGTAGGAACTAAGAAGACCATGGGACGAGCTTCAT
species | Glycine max |
transcript | GLYMA15G37490.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tctgctgaagaagtgagaaacatgtattctgatgaagaggtgtttgtttattcagAGTAGAGTTTGTTCATTGAAGAACTGAGGGAGGTTCAAGTCCATGATACTTTGAAATCTGTCTGTAGTAGGAACTAAGAAGACCATGGGACGAGCTTCAT
ttctgat putative branch site (score: 3)
tttgttt putative PPT
tttgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttagtttggtaattggatgcgttgaatgaaacttcgttagttcttctgctgaagaagtgagaaacatgtattctgatgaagaggtgtttgtttattcagAGTAGAGTTTGTTCATTGAAGAACTGAGGGAGGTTCAAGTCCATGATACTTTGAAATCTGTCTGTAGTAGGAACTAAGAAGACCATGGGACGAGCTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - tggatgc
- - - - - - - - - - - -tgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttt