1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agcttaagcttatattcatggcctacattcattagcacttacaagctttactttaaatgtatttatgcatcatataattgtgttgcttttgcatcttcagAATCGTTTTGGCACCACTATTTAGAGCAAGATCTTACAACAACGTTGCTCAGCCCCATGCTATTCTATATTACTCTCAAAGAGCTACCAAGGGAGGTCTT
species | Glycine max |
transcript | GLYMA15G35410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCCCTCTTCTTACTCCTTACGGGATGGGGAACTTCAATCTATCCCACAG AATCGTTTTGGCACCACTATTTAGAGCAAGATCTTACAACAACGTTGCTCAEST: gi|151401485|gb|EV271299.1|EV271299
genomic: ATCCCTCTTCTTACTCCTTACGGGATGGGGAACTTCAATCTATCCCACAGgtactttctc ... gcatcttcagAATCGTTTTGGCACCACTATTTAGAGCAAGATCTTACAACAACGTTGCTCA
EST: ATCCCTCTTCTTACTCCTTACGGGATGGGGAACTTCAATCTATCCCACAG AATCGTTTTGGCACCACTATTTAGAGCAAGATCTTACAACAACGTTGCTCA
genomic: ATCCCTCTTCTTACTCCTTACGGGATGGGGAACTTCAATCTATCCCACAGgtactttctc ... gcatcttcagAATCGTTTTGGCACCACTATTTAGAGCAAGATCTTACAACAACGTTGCTCA
ctttactttaaatgtatttatgcatcatataattgtgttgcttttgcatcttcagAATCGTTTTGGCACCACTATTTAGAGCAAGATCTTACAACAACGTTGCTCAGCCCCATGCTATTCTATATTACTCTCAAAGAGCTACCAAGGGAGGTCTT
cttttgc CT-rich tract
tttaaatgtatttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttaagcttatattcatggcctacattcattagcacttacaagctttactttaaatgtatttatgcatcatataattgtgttgcttttgcatcttcagAATCGTTTTGGCACCACTATTTAGAGCAAGATCTTACAACAACGTTGCTCAGCCCCATGCTATTCTATATTACTCTCAAAGAGCTACCAAGGGAGGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - catggcc
- - - - - - - - - - - - acattca
- - - - - - - - - - - - - - - - - -cacttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct