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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcattttatgtggtgcatttgagctgcaaatggactttggattggctggacaccaaaataaaaacttgcctttgtaatactatttcttttcatcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGATACCAAGATGAATGAGTT

Basic information

species Glycine max
transcript GLYMA15G18760.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298169377|gb|HO020737.1|HO020737
EST:     CTCTTTGCNNNNNNNCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CTCTTTGCTTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|15814355|gb|BI786630.1|BI786630
EST:     CTCTTTGCNNNNNNNCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CTCTTTGCTTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|192295033|gb|FG986752.1|FG986752
EST:     CTCTTTGCCTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CTCTTTGCTTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|209712728|gb|BW681582.1|BW681582
EST:     CTCTTTGCNNNNNNNCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CTCTTTGCTTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|213591344|gb|DB959886.1|DB959886
EST:     CTCTTTGC-TTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CTCTTTGCTTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggacaccaaaataaaaacttgcctttgtaatactatttcttttcatcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGATACCAAGATGAATGAGTT
                                  ctatttcttttcatct  CT-rich tract
                             taatactatttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcattttatgtggtgcatttgagctgcaaatggactttggattggctggacaccaaaataaaaacttgcctttgtaatactatttcttttcatcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGATACCAAGATGAATGAGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - tgtggtg
- - - - - - - - - - gagctgc
- - - - - - - - - - - - - - - - gactttg
- - - - - - - - - - - - - - - - - - - - - tggctgg
- - - - - - - - - - - - - - - - - - - - - - - - - caccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcct