1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcattttatgtggtgcatttgagctgcaaatggactttggattggctggacaccaaaataaaaacttgcctttgtaatactatttcttttcatcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGATACCAAGATGAATGAGTT
species | Glycine max |
transcript | GLYMA15G18760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTTTGCNNNNNNNCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAG TCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGEST: gi|15814355|gb|BI786630.1|BI786630
genomic: CTCTTTGCTTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: CTCTTTGCNNNNNNNCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAG TCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGEST: gi|192295033|gb|FG986752.1|FG986752
genomic: CTCTTTGCTTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: CTCTTTGCCTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAG TCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGEST: gi|209712728|gb|BW681582.1|BW681582
genomic: CTCTTTGCTTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: CTCTTTGCNNNNNNNCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAG TCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGEST: gi|213591344|gb|DB959886.1|DB959886
genomic: CTCTTTGCTTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: CTCTTTGC-TTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAG TCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CTCTTTGCTTTTTTTCCTCTCCGATCAACGACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
ctggacaccaaaataaaaacttgcctttgtaatactatttcttttcatcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGATACCAAGATGAATGAGTT
ctatttcttttcatct CT-rich tract
taatactatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattttatgtggtgcatttgagctgcaaatggactttggattggctggacaccaaaataaaaacttgcctttgtaatactatttcttttcatcttgcagTCATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGATACCAAGATGAATGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG