1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtctctctgttttctgctgctgttgttgttctgatgaaatcttaagcaaattatgaaaacatcgctaatttataaacttgttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAAAGGAACGAGGAGTGGGCTTTGGCGAAGAAGCAGGAACTCGATGCCGCT
species | Glycine max |
transcript | GLYMA15G18170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAEST: gi|192327716|gb|FK021351.1|FK021351
genomic: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGCGGTGAAGAAGGAGAAEST: gi|192295535|gb|FG988109.1|FG988109
genomic: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAEST: gi|10232891|gb|BE801779.1|BE801779
genomic: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: AGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAEST: gi|151400307|gb|EV270121.1|EV270121
genomic: AGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: CCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAEST: gi|298195246|gb|HO043774.1|HO043774
genomic: CCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: GCCGTTGCAAGCAGTGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAEST: gi|209702466|gb|BW667098.1|BW667098
genomic: GCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCGTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAEST: gi|33388304|gb|CA851511.1|CA851511
genomic: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: CCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAEST: gi|209728367|gb|BW660005.1|BW660005
genomic: CCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: TCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCGTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAEST: gi|192294770|gb|FG986619.1|FG986619
genomic: TCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAEST: gi|151404968|gb|EV274782.1|EV274782
genomic: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAEST: gi|151395296|gb|EV265167.1|EV265167
genomic: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCGTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAEST: gi|192307998|gb|FG998981.1|FG998981
genomic: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
EST: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCA AATGGGCGAAGCAAAGGCGTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
genomic: ACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAgtgagtctct ... ttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAA
gaaatcttaagcaaattatgaaaacatcgctaatttataaacttgttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAAAGGAACGAGGAGTGGGCTTTGGCGAAGAAGCAGGAACTCGATGCCGCT
cgctaat putative branch site (score: 3)
taatttataaacttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctctctgttttctgctgctgttgttgttctgatgaaatcttaagcaaattatgaaaacatcgctaatttataaacttgttgtatgaagAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAAAGGAACGAGGAGTGGGCTTTGGCGAAGAAGCAGGAACTCGATGCCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC