1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcgcaccctttttggctttcgtttcctctcaatcactcgcttctctcactttcgtgtaatctctatggtttcgcttcgaattggattgcagGAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAACTTTAATCTTCTTCTCCCTCTTCAACCACGCAG
species | Glycine max |
transcript | GLYMA15G17330.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGGCTGCAACCATTCCTTTCTCTCTGCTTAG GAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCATEST: gi|16342657|gb|BI968252.1|BI968252
genomic: ATGGCAGCAACCATTCCTTTCTCTCTGCTTAGgtgcgcaccc ... tggattgcagGAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAA
EST: AGCAACCATTCCTTTCTCTCTGCTTAG GAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAAEST: gi|16283453|gb|BI945558.1|BI945558
genomic: AGCAACCATTCCTTTCTCTCTGCTTAGgtgcgcaccc ... tggattgcagGAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAA
EST: GAAAATACCCACCCAACCATGGCAGCAACCATTCCTTTCTCTCTGCTTAG GAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAAEST: gi|16349218|gb|BI974813.1|BI974813
genomic: GAAAATACCCACCCAACCATGGCAGCAACCATTCCTTTCTCTCTGCTTAGgtgcgcaccc ... tggattgcagGAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAA
EST: GAAAATACCCACCCAACCATGGCAGCAACCATTCCTTTCTCTCTGCTTAG GAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAAEST: gi|298184576|gb|HO029789.1|HO029789
genomic: GAAAATACCCACCCAACCATGGCAGCAACCATTCCTTTCTCTCTGCTTAGgtgcgcaccc ... tggattgcagGAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAA
EST: GAAAATACCCACCCAACCATGGCAGCAACCATTCCTTTCTCTCTGCTTAG GAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAACCTCCAAEST: gi|31560970|gb|CD486808.1|CD486808
genomic: GAAAATACCCACCCAACCATGGCAGCAACCATTCCTTTCTCTCTGCTTAGgtgcgcaccc ... tggattgcagGAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAA
EST: GAAAATACCCACCCAACCATGGCAGCAACCATTCCTTTCTCTCTGCTTAG GAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAAEST: gi|298168753|gb|HO009683.1|HO009683
genomic: GAAAATACCCACCCAACCATGGCAGCAACCATTCCTTTCTCTCTGCTTAGgtgcgcaccc ... tggattgcagGAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAA
EST: GAAAATACCCACCCAACCATGGCAGCAACCATTCCTTTCTCTCTGCTTAG GAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAA
genomic: GAAAATACCCACCCAACCATGGCAGCAACCATTCCTTTCTCTCTGCTTAGgtgcgcaccc ... tggattgcagGAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAA
tcgcttctctcactttcgtgtaatctctatggtttcgcttcgaattggattgcagGAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAACTTTAATCTTCTTCTCCCTCTTCAACCACGCAG
ctctcac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcaccctttttggctttcgtttcctctcaatcactcgcttctctcactttcgtgtaatctctatggtttcgcttcgaattggattgcagGAACTGCGCGCCATTGAAACTAGCAACACCTTTCGCTCGCAAAGCCTCCAACTTTAATCTTCTTCTCCCTCTTCAACCACGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG