1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acttgttacttgacaatcacaagtggtatttatgcaatatgccttttcctggtaatcattgaaataatcagtgtttaataaataataattcatattttagGTTCTCTTCTTTATACGGATGGCAGCACCATTGGCATGTCTTGTTGGGAGTGGTTTATCTATACAGAGTAATAAATTAACTCTTGGCAAGGACGTCAATG
species | Glycine max |
transcript | GLYMA15G17070.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCAGATTCTTTGTTTTGAG GTTCTCTTCTTTATACGGATGGCAGCACCATTGGCATGTCTTGTTGGGAGTEST: gi|192301112|gb|FG988007.1|FG988007
genomic: CTCAGATTCTTTGTTTTGAGgtatgtgggt ... catattttagGTTCTCTTCTTTATACGGATGGCAGCACCATTGGCATGTCTTGTTGGGAGT
EST: ACTTCCTTCATACTCTCTCTCAGATTCTTTGTTTTGAG GTTCTCTTCTTTATACGGATGGCAGCACCATTGGCATGTCTTGTTGGGAGTEST: gi|120496671|gb|EH224838.1|EH224838
genomic: ACTTCCTTCATACTCTCTCTCAGATTCTTTGTTTTGAGgtatgtgggt ... catattttagGTTCTCTTCTTTATACGGATGGCAGCACCATTGGCATGTCTTGTTGGGAGT
EST: ATTCTTTGTTTTGAG GTTCTCTTCTTTATACGGATGGCAGCACCATTGGCATGTCTTGTTGGGAGT
genomic: ATTCTTTGTTTTGAGgtatgtgggt ... catattttagGTTCTCTTCTTTATACGGATGGCAGCACCATTGGCATGTCTTGTTGGGAGT
ttcctggtaatcattgaaataatcagtgtttaataaataataattcatattttagGTTCTCTTCTTTATACGGATGGCAGCACCATTGGCATGTCTTGTTGGGAGTGGTTTATCTATACAGAGTAATAAATTAACTCTTGGCAAGGACGTCAATG
gtttaat putative branch site (score: 4)
aaataatcagtgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgttacttgacaatcacaagtggtatttatgcaatatgccttttcctggtaatcattgaaataatcagtgtttaataaataataattcatattttagGTTCTCTTCTTTATACGGATGGCAGCACCATTGGCATGTCTTGTTGGGAGTGGTTTATCTATACAGAGTAATAAATTAACTCTTGGCAAGGACGTCAATG
- - - - - - -caatcac
- - - - - - - - - - - - - - - tatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaataa