1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttccaatttctttccttttttcgcaccctttttgtgtctcttcaatctgcacctcttaccaacattgttttctttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGCTCTCGTGCTGAAAACAGAGCACGACCCATCAGAGCTTCGGTTGGTGCTC
species | Glycine max |
transcript | GLYMA15G16830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAG TTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGCEST: gi|15286356|gb|BI470247.1|BI470247
genomic: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGgttccaattt ... ttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
EST: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAG TTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGCEST: gi|7691176|gb|AW759308.1|AW759308
genomic: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGgttccaattt ... ttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
EST: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAG TTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGCEST: gi|22539829|gb|BU089672.1|BU089672
genomic: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGgttccaattt ... ttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
EST: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAG TTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGCEST: gi|151409002|gb|EV278810.1|EV278810
genomic: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGgttccaattt ... ttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
EST: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAG TTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
genomic: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGgttccaattt ... ttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
tttttgtgtctcttcaatctgcacctcttaccaacattgttttctttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGCTCTCGTGCTGAAAACAGAGCACGACCCATCAGAGCTTCGGTTGGTGCTC
ctcttac putative branch site (score: 3)
cattgttttctttct putative PPT
attgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccaatttctttccttttttcgcaccctttttgtgtctcttcaatctgcacctcttaccaacattgttttctttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGCTCTCGTGCTGAAAACAGAGCACGACCCATCAGAGCTTCGGTTGGTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT