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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagttttgtacttataggatttaactgagttttcagtttggtggcaccctttggccatgcgaaattttgcttgaacagatatttctttcttcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACTTTAAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCT

Basic information

species Glycine max
transcript GLYMA15G13700.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7684977|gb|AW755625.1|AW755625
EST:     CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTC                         GTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
genomic: CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTCgtaagcttca ... tcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
EST: gi|11687353|gb|BF594993.1|BF594993
EST:     CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTC                         GTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
genomic: CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTCgtaagcttca ... tcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
EST: gi|298168064|gb|HO013327.1|HO013327
EST:     CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTC                         GTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
genomic: CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTCgtaagcttca ... tcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
EST: gi|208205827|gb|GE007078.1|GE007078
EST:     CGATTCCTTCGTTCACTC                         GTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
genomic: CGATTCCTTCGTTCACTCgtaagcttca ... tcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
EST: gi|213596786|gb|DB964077.1|DB964077
EST:     CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTC                         GTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
genomic: CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTCgtaagcttca ... tcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
EST: gi|213587902|gb|DB971391.1|DB971391
EST:     CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTC                         GTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
genomic: CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTCgtaagcttca ... tcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
EST: gi|298187274|gb|HO034423.1|HO034423
EST:     CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTC                         GTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
genomic: CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTCgtaagcttca ... tcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
EST: gi|192319051|gb|FK010615.1|FK010615
EST:     CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTC                         GTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
genomic: CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTCgtaagcttca ... tcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
EST: gi|9203416|gb|BE329569.1|BE329569
EST:     CATCGCTTGGTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTC                         GTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
genomic: CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTCgtaagcttca ... tcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
EST: gi|151400283|gb|EV270097.1|EV270097
EST:     CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTC                         GTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
genomic: CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTCgtaagcttca ... tcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
EST: gi|15815541|gb|BI787816.1|BI787816
EST:     CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTC                         GTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT
genomic: CATCGCTTGTTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCACTCgtaagcttca ... tcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accctttggccatgcgaaattttgcttgaacagatatttctttcttcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACTTTAAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCT
                                  tatttctttcttcctt  CT-rich tract
                                 atatttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gagttttgtacttataggatttaactgagttttcagtttggtggcaccctttggccatgcgaaattttgcttgaacagatatttctttcttcctttccagGTTATTTTGCATGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGACTTTAAGCTTGTGAAAGAATAATTGCCGAATGGAACTTGCAAGACCTGCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - ctgagtt
- - - - - - - - - - - - - - - - - - -ttggtgg
- - - - - - - - - - - - - - - - - - - - - - caccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga