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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctccctaaccgcctttcattgtatttattatcatcaattgtttgtgctagttctatattaatttctctctcttcttttattctagACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCTACCGTGGATGACGGGGTTTCATCTGATGCAGAAAATAAGCGAGCCAAAACCACTG

Basic information

species Glycine max
transcript GLYMA15G11680.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346516|gb|GR856238.1|GR856238
EST:     GTCAAGAAGGAAATCGATGAAACACCTCTTCACATTAAT                         ACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCTACCGTG
genomic: GTCAAGAAGGAAATCGATGAAACACCTCTTCACATTAATgtaacctccc ... tttattctagACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCTACCGTG
EST: gi|254327037|gb|GR836646.1|GR836646
EST:     AACCCAACATCGTCAAGAAGGAAATCGATGAAACACCTCTTCACATTAAT                         ACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCTACCGTG
genomic: AACCCAACATCGTCAAGAAGGAAATCGATGAAACACCTCTTCACATTAATgtaacctccc ... tttattctagACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCTACCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcaattgtttgtgctagttctatattaatttctctctcttcttttattctagACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCTACCGTGGATGACGGGGTTTCATCTGATGCAGAAAATAAGCGAGCCAAAACCACTG
                         tattaat  putative branch site (score: 2)
                    ttctatattaatttct  CT-rich tract
                 tagttctatattaatt  TA-rich tract