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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgtattttgaaggattaatttcgttttgatcgcgctgatttttgaactgtaggtgactgtttctttgttgattgatgctcatttttgtggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG

Basic information

species Glycine max
transcript GLYMA15G11350.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11350.3 (Glycine max), 3'ss of exon 1
lower sequence: AT4G04860.1 (Arabidopsis thaliana), 3'ss of exon 1
-tttgtattttgaaggattaatttcgttttgatcgcgctgatttttgaactgtaggtgactgtttctttgttgattgatgctcatttttgtggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG
 |  ||  || |   | ||| |  ||  |   |   |  | | | |||| |       | |     ||  |      || || ||| || | || |||||||| || ||||| ||| |  | || ||||| || | | | |||||||||||||| || | ||||||||| ||||||||||||||||| || || || ||||
gtacgtgctt-gcttgcttattcgcgaatcttttttggggttctctgaaattctctaaattagggtttcat------attctgattgtttttgttttgcagATCATATCTCCATATAACCTTTATTTGAATCCGACACTTGTGGTGAAGCAATACCAATATTGGCGTCTCGTTACTAATTTCTTGTATTTCCGGAAGATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9259041|gb|BE347188.1|BE347188
EST:     GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGAT                         ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
genomic: GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATgtaatcccct ... ggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
EST: gi|9203644|gb|BE329868.1|BE329868
EST:     GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGAT                         ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
genomic: GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATgtaatcccct ... ggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
EST: gi|254322572|gb|GR837986.1|GR837986
EST:     GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGAT                         ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
genomic: GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATgtaatcccct ... ggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
EST: gi|213590246|gb|DB970086.1|DB970086
EST:     GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGAT                         ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
genomic: GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATgtaatcccct ... ggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
EST: gi|19453304|gb|BM954714.1|BM954714
EST:     GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGAT                         ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
genomic: GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATgtaatcccct ... ggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
EST: gi|213598283|gb|DB970167.1|DB970167
EST:     GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGAT                         ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
genomic: GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATgtaatcccct ... ggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
EST: gi|16348305|gb|BI973900.1|BI973900
EST:     GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGAT                         ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
genomic: GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATgtaatcccct ... ggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
EST: gi|254327112|gb|GR836721.1|GR836721
EST:     GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGAT                         ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
genomic: GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATgtaatcccct ... ggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
EST: gi|18733025|gb|BM527383.1|BM527383
EST:     GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGAT                         ATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA
genomic: GCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATgtaatcccct ... ggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaactgtaggtgactgtttctttgttgattgatgctcatttttgtggtgttgcagATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG
                          gattgat  putative branch site (score: 4)
                                   tcattttt  TA-rich tract