1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attaaaaatatggatgttgcagatcattttaaccatacgtatggctttgagtttgcttagtatcttcattagaataatttggtttgttgtgtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTCTGCTCTG
species | Glycine max |
transcript | GLYMA15G10940.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGGGTTTTTATGCTTAGTTGCAAAGATGCTTCCTGATCAGAGAAAAAAG TCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATAC
genomic: AAGGGTTTTTATGCTTAGTTGCAAAGATGCTTCCTGATCAGAGAAAAAAGgtaaagttac ... gtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATAC
tttgagtttgcttagtatcttcattagaataatttggtttgttgtgtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTCTGCTCTG
tgttttt CT-rich tract
ttcattagaataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaaaaatatggatgttgcagatcattttaaccatacgtatggctttgagtttgcttagtatcttcattagaataatttggtttgttgtgtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTCTGCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -aaaaata
- - - - - - - tgttgca
- - - - - - - - - - - - - - - - ccatacg
- - - - - - - - - - - - - - - - - - - - - ggctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtttg