Sequence
atgc intronic sequence ATGC exonic sequence...attaaaaatatggatgttgcagatcattttaaccatacgtatggctttgagtttgcttagtatcttcattagaataatttggtttgttgtgtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTCTGCTCTG
Basic information
species | Glycine max |
transcript | GLYMA15G10940.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G10940.4 (Glycine max), 3'ss of exon 1
lower sequence: AT5G19010.1 (Arabidopsis thaliana), 3'ss of exon 1
-------------------------------------attaaaa---atatggat--gttgcagatcattttaaccatac---------gtatggctttgagtttgcttagtatc----ttcattagaataatt-tggtttgttgtgtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTCTGCTCTG
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gtccaatttttcaatctcttatgtatcagatttgcttattagaactgattaggatctgtagcaatcctttttactgttactgccttttagtttagtcctaatctttctctgtattgaagcttttgatattgacaatagatttttctgtatattcagTCATCAGTTGAGGTAGATTTCTTCACGGAATATGGTGAAGGAAGCAGATACAGAATAGAGGAAGTGATTGGTAAAGGAAGTTATGGAGTTGTCTGTTCTG
upper sequence: GLYMA15G10940.4 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 1
-attaaaaatatgg-atgttgcagatcattttaaccatacgtatggctttgagtttgcttagtatcttcattagaataatttggtttgttgtgtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTCTGCTCTG
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actttcctctctgttatcttgccggccatttcaattgccatcatttctgtgtgtt-gttcataaaatgtcttgctttaaac-ggtccttcctggcgacacagGCATCTGTGGAGGTAGATTTCTTCACTGAATACGGCGAGGGAAGCAGGTACAGGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTCGTTTGTTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209718195|gb|BW657827.1|BW657827EST: TCGTCTTCTTTGGCAGAGTTAGTGATTATCGCCGCAGCAAATTCTCCAAG TCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATAC
genomic: TCGTCTTCTTTGGCAGAGTTAGTGATTATCGCCGCAGCAAATTCTCCAAGgttatttttt ... gtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgagtttgcttagtatcttcattagaataatttggtttgttgtgtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTCTGCTCTG
tgttttt CT-rich tract
ttcattagaataattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attaaaaatatggatgttgcagatcattttaaccatacgtatggctttgagtttgcttagtatcttcattagaataatttggtttgttgtgtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTCTGCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA