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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtaagattcacaccatttggtgttcgatttcattttcctctgttaatgatttttacgaggtggtgttttgttatgtgtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCG

Basic information

species Glycine max
transcript GLYMA15G10220.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10220.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv19s0135g00100.t01 (Vitis vinifera), 3'ss of exon 1
--------gtgcgtaagattcacaccatttggtgttcgattt---cattttcctctgttaatgatttttacgaggtggtgttttgttatgtgtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCG
         | |  ||  ||| |  ||          |   |     ||||  |   ||  ||| | |   ||    |   |  |||  || |    |||||||||||||||||||||||| |||||||| |||||  ||||| | ||| |||| || | ||||||| | |||||||| ||||| || ||||||||||| |
tttttcttttcctgaattttctcggcaaccaaacaaaggaataggtgttttatttaattcctgaatctattgattctgaaatgggtt-cgtttgggcgcagTTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAGCATCCGAGGATCTACAGGATGAAGCTTTGGGCTACGAACGAGGTTCGTG

upper sequence: GLYMA15G10220.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0003g03150.t01 (Vitis vinifera), 3'ss of exon 1
-gtgcgtaagattcacaccatttggtgttcgatttcattttcctctgttaatgattt---------ttacgaggtggtgttttgttatgtgtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCG
  | | | |  |   |  |||||     ||      | |       | |   | |||          ||   ||   | |||| || | || || |||||||||||||||||||||| || ||||| ||||| ||  ||||  | ||| |||| || ||||||||||| ||||||||||||||||| || ||||||||||
ttttcattacctcttcctcatttttctgtcataacaaatggagggaggtgggggtttaggcctgatctaatggggtttatttttttgtttggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCG

upper sequence: GLYMA15G10220.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0003g03130.t01 (Vitis vinifera), 3'ss of exon 1
--------gtgcgtaagattcacaccatttggtgttcgatttcattttcctctgttaatgattt---ttacgaggtggtgttttgttatgtgtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCG
        || |  || ||    |       | |||   |||  ||||  |  | |  |||  |    ||   ||   ||||   || | ||  | |||||||||||||||||||||| || ||||| ||||| ||  ||||    ||| |||| || ||||||||||| |||||||||||||| || || ||||||||||
atttttctgt-cccaacatatggatggaagtgggttttttttatttttttttgggttttgacctgatctaatggggtttgttcgtttgtttgggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCG

upper sequence: GLYMA15G10220.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S44_13V6.1 (Physcomitrella patens), 3'ss of exon 1
---------gtgcgtaagattcac-accatttggtgttcgatttcattttcctctgttaatgatttt-tacgaggtggtgttttgttatgtgtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCG
         ||   | ||   ||    | ||| |   | | |||   |  |  || |   ||   |  ||       ||| ||||  || | | ||| ||||||||||||||||||||||||||| | || ||||| ||    |   || ||  |||||||   ||||| |||||| | ||||||||  |||| || ||||
cgcatcgaagtttttcagggccattgacgtttagctcttggttttcgtgacgcctttccttggcgtggtattcacaagtgatttgg-atttatttttacagTTTCACCAGTACCAGGTGGTTGGGCGAGCCCTTCCAACCCCGGGCAATGAGACCCCCAAGGCTTACCGCATGAAGTTGTGGGCCACGGACGAAGTGCGCG

upper sequence: GLYMA15G10220.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S74_193V6.2 (Physcomitrella patens), 3'ss of exon 1
-gtgcgtaa--gattcacaccatt-tggtgttcgatttcat----tttcctctgttaatgatttttacgaggtggtgtttt--gttatgtgtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCG
 |||  | |  | || |   ||   | || |      ||||    |  | | | || || |||||   |   || |   |    ||   | |  |  |||||||| || ||||||||||||||| |||| ||||| || |   |  || ||   || |||   ||||| ||||||||||||||||||||||| || ||||
tgtgtatgattgtttgatgtcaccgtagtatgacccatcatgcggtaacttgttttcatcattttccggttctgatcgctccaatttcttttggtatcagTTTCATCAATACCAGGTGGTTGGGCGGGCCCTTCCTACCGCGACCAATGAGACACCTAAGGCTTACCGCATGAAGCTCTGGGCCACCAACGAAGTGCGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045641|gb|CA783167.1|CA783167
EST:     GGGAGCTTTTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|254336532|gb|GR842711.1|GR842711
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|209728866|gb|BW666863.1|BW666863
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCGGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|7286164|gb|AW598651.1|AW598651
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|151397783|gb|EV267656.1|EV267656
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|42722678|gb|CK768577.1|CK768577
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298167538|gb|HO012801.1|HO012801
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|254346949|gb|GR856671.1|GR856671
EST:     GGGAGATTCTTTG-TTGCTA-CTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|7589708|gb|AW705469.1|AW705469
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298168356|gb|HO014531.1|HO014531
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         -TTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|213594097|gb|DB961957.1|DB961957
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|6915806|gb|AW397336.1|AW397336
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|192299512|gb|FG988767.1|FG988767
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298199038|gb|HO042401.1|HO042401
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298183962|gb|HO029175.1|HO029175
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|16282896|gb|BI945262.1|BI945262
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298191893|gb|HO035975.1|HO035975
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|213617196|gb|DB963759.1|DB963759
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|13478877|gb|BG508220.1|BG508220
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAA-GGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298172752|gb|HO020306.1|HO020306
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298191627|gb|HO039106.1|HO039106
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAGATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|7146871|gb|AW508793.1|AW508793
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|17400723|gb|BM177505.1|BM177505
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|4396503|gb|AI495500.1|AI495500
EST:     TACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: TACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|15813728|gb|BI786003.1|BI786003
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|46492799|gb|CN472355.1|CN472355
EST:     GGCAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|254341413|gb|GR855141.1|GR855141
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|192328396|gb|FK020107.1|FK020107
EST:     TACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: TACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|10708965|gb|BF008750.1|BF008750
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|42722744|gb|CK768643.1|CK768643
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298180455|gb|HO022008.1|HO022008
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|4436963|gb|AI522828.1|AI522828
EST:     GTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298173442|gb|HO016778.1|HO016778
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|19054214|gb|BM732881.1|BM732881
EST:     GGGAGATTCTTTGTATGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298171669|gb|HO021261.1|HO021261
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|151399094|gb|EV268965.1|EV268965
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|254346948|gb|GR856670.1|GR856670
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|213593205|gb|DB966086.1|DB966086
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298175900|gb|HO015305.1|HO015305
EST:     GGGAGATTCTTCGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|46492879|gb|CN472435.1|CN472435
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|4284454|gb|AI440783.1|AI440783
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|58022197|gb|CX708938.1|CX708938
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|18040316|gb|BM308610.1|BM308610
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|4313673|gb|AI460792.1|AI460792
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|4260137|gb|AI416633.1|AI416633
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298175503|gb|HO018214.1|HO018214
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298181632|gb|HO025807.1|HO025807
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298174886|gb|HO014803.1|HO014803
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCTG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298194054|gb|HO040702.1|HO040702
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298188527|gb|HO035220.1|HO035220
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAGGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|13791133|gb|BG653724.1|BG653724
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|254332266|gb|GR843850.1|GR843850
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|7924745|gb|AW830771.1|AW830771
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|57574691|gb|CX547666.1|CX547666
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|31467724|gb|CD409752.1|CD409752
EST:     TGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: TGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|27423942|gb|CA935462.1|CA935462
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298197523|gb|HO045002.1|HO045002
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|7042048|gb|AW471942.1|AW471942
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298171623|gb|HO021215.1|HO021215
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTTACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|58018334|gb|CX705076.1|CX705076
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCA-GTGGTTGGGGAGGGCTCTTCCCACGGAAGCAGATCA
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTT-GGGAGGGCTCTTCCCACGGAAGCAGATCA
EST: gi|6847520|gb|AW349881.1|AW349881
EST:     GGGAGATTCTTTGTNNGCTNNNNNNTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCNCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|7041662|gb|AW471614.1|AW471614
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298174333|gb|HO017669.1|HO017669
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|8286160|gb|BE023719.1|BE023719
EST:     AGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: AGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|7685588|gb|AW756236.1|AW756236
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298198692|gb|HO042055.1|HO042055
EST:     GGGAGATTCTTTGTTTGCTACCCTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298181671|gb|HO025846.1|HO025846
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|298193912|gb|HO040560.1|HO040560
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
EST: gi|7232600|gb|AW567955.1|AW567955
EST:     GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG
genomic: GGGAGATTCTTTGTTTGCTACCTTCTCTCGGAAAAATGGTTACGTTCAGGgtgcgtaaga ... gtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcctctgttaatgatttttacgaggtggtgttttgttatgtgtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCG
         tgttaat  putative branch site (score: 3)
         tgttaatgattttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgtaagattcacaccatttggtgttcgatttcattttcctctgttaatgatttttacgaggtggtgttttgttatgtgtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC