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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttttttgttttctctttaaaattattacaaatatattggctcctttgtgagataaattattctttaacccacatccgaatcacaatagGTCTTATTGATTATGATATGCTGGAGAAAACTGCTACTCTCTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTTGAGACATTGACTACCC

Basic information

species Glycine max
transcript GLYMA15G09640.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G09640.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0008g00770.t01 (Vitis vinifera), 3'ss of exon 4
gtgttttttgttttct-ctttaaaattattacaaatatattggctcctttgtgagat-aaattattctttaacccaca---tccgaatcac--aatagGTCTTATTGATTATGATATGCTGGAGAAAACTGCTACTCTCTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTTGAGACATTGACTACCC
|||||   | |||  |  ||| || ||| |  |      ||||     || || |||   |||  |   | |     |   | | |||     || ||||||| |||||||||| ||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||  |||| || ||
gtgttgcatctttattgtttttaacttactgtaggatagttggtctacttatgtgattggatttgtgcctgatttgaagtttacaaattttcaaacagGTCTTGTTGATTATGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTCGAGATTTTGATTATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24135899|gb|BU926409.1|BU926409
EST:     TTGACTTGATGAATCAACAG                         GTCTTATTGATTATGATATGCTGGAGAAAACTGCTACTCTCTTTCGACCAA
genomic: TTGACTTGATGAATCAACAGgtgttttttg ... atcacaatagGTCTTATTGATTATGATATGCTGGAGAAAACTGCTACTCTCTTTCGACCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattggctcctttgtgagataaattattctttaacccacatccgaatcacaatagGTCTTATTGATTATGATATGCTGGAGAAAACTGCTACTCTCTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTTGAGACATTGACTACCC
                            ctttaac  putative branch site (score: 3)
                agataaattattcttt  TA-rich tract