1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtattttatttattatttgcgtatttatttttataattttgtgttggatttggtttattagttcattgatgttggatttgtgttgcagACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG
species | Glycine max |
transcript | GLYMA15G09410.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAG ACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGEST: gi|207730090|gb|GD704990.1|GD704990
genomic: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAGgtattttatt ... tgtgttgcagACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTG
EST: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAG ACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGEST: gi|193528721|gb|FK483537.1|FK483537
genomic: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAGgtattttatt ... tgtgttgcagACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTG
EST: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAG ACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGEST: gi|208219355|gb|GE020145.1|GE020145
genomic: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAGgtattttatt ... tgtgttgcagACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTG
EST: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAG ACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGEST: gi|207802024|gb|GD774248.1|GD774248
genomic: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAGgtattttatt ... tgtgttgcagACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTG
EST: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAG ACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGEST: gi|207735239|gb|GD712966.1|GD712966
genomic: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAGgtattttatt ... tgtgttgcagACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTG
EST: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAG ACCAGAGATGGTTGTTGGCTGGTACCATTCGCATEST: gi|193539724|gb|FK498652.1|FK498652
genomic: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAGgtattttatt ... tgtgttgcagACCAGAGATGGTTGTTGGCTGGTACCATTCGCAT
EST: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAG ACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGEST: gi|208149393|gb|GD948895.1|GD948895
genomic: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAGgtattttatt ... tgtgttgcagACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTG
EST: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAG ACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTG
genomic: GATCATGTTTTTCAGACTAATATGCTTGACATGCTCAAACAAACCGGAAGgtattttatt ... tgtgttgcagACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTG
taattttgtgttggatttggtttattagttcattgatgttggatttgtgttgcagACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG
cattgat putative branch site (score: 4)
tttattagttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttatttattatttgcgtatttatttttataattttgtgttggatttggtttattagttcattgatgttggatttgtgttgcagACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT