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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtccaaaagtttccgttttttagcctaatcgagtcatggggtacccgattacaaaattagggttttcgtgtttttgtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCGTGGACGAGTACACCGTTCGTGTGGTTGATGTCTTCGCAATGCCGCAGAG

Basic information

species Glycine max
transcript GLYMA15G09410.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G09410.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 1
------------------------------gtaaagtccaaaagtttccgttttttagcctaatcgagtca--tggggtacccgattacaa------aattagggttttcgtgtttttgtaattg-------cagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCGTGGACGAGTACACCGTTCGTGTGGTTGATGTCTTCGCAATGCCGCAGAG
                               | || |  |    |      |  ||    || |||  |||  |      ||  ||||         |||| |  || |  || ||| |  ||||        ||| || ||||| |||||||||||||| |||||| ||||||| ||||| ||||| || |||||||| |||||||| || ||||| ||||| |||||||||||
gtaacatcttgacgccaagacaagttttatttcaattttagggctgctttgtgatttttttattcgcatcacttccaaaccctaattagggtttttcaatttgttttcttttgatttggggattgggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAG

upper sequence: GLYMA15G09410.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S146_35V6.1 (Physcomitrella patens), 3'ss of exon 1
------gtaaagtccaaaagtttccgttttttagcctaatcgagtcatggggtacccgattacaaaattagggt--tttcgtgtttttgtaat--tgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCGTGGACGAGTACACCGTTCGTGTGGTTGATGTCTTCGCAATGCCGCAGAG
       | | ||       | | |   |    ||   |||   |    |  || | |       | ||    |  |||| ||  |      |  |||||| || || || ||||| ||||||||||||||  ||||||| || || || |||||||||||||| |||||||| || ||||| || || ||||| |||||
tgttttttcacgtttggctatgtacacctagatgcaatatccctttcgtgcttatcaggaggttgatttgcactggtttcatgcctggacgttcgtgcagGTAGAGCGGGAGTTCCTATGGAAGTGATGGGACTGATGCTCGGGGAGTTTGTGGACGAGTACACTGTTCGTGTCGTAGATGTATTTGCTATGCCTCAGAG

upper sequence: GLYMA15G09410.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S46_324V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaaagtccaaaagtttccgttttttagcctaatcgagtcatggggtacccgattacaaaattagggtt----ttcgtg-----tttttgtaat--tgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCGTGGACGAGTACACCGTTCGTGTGGTTGATGTCTTCGCAATGCCGCAGAG
 || | |         ||  || | ||    | |  | | |   | |   || |   |    | || ||    || |||     |||     ||  |||||| || ||||| || || ||||| ||||||||  |||||||||| || ||||||||||||||||| |||||||| || ||||| || || ||||| |||||
-tacattagggttcggtctattgtctaaagaatttaaatgacttgctcttcgttgggagggcttggattcaaattggtgacaaatttggacgatcgtgcagGTAGAGCTGGAGTGCCTATGGAGGTGATGGGGCTGATGCTTGGGGAGTTCGTGGACGAGTACACTGTTCGTGTTGTGGATGTATTTGCTATGCCACAGAG

upper sequence: GLYMA15G09410.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ37436 (Selaginella moellendorffii), 3'ss of exon 1
gtaaagtccaaaagtttccgttttttagcctaatcgagtcatggggtacccgattacaaaattagggttttcgtgtttttgtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCGTGGACGAGTACACCGTTCGTGTGGTTGATGTCTTCGCAATGCCGCAGAG
                              |||  |||  |  | |  ||  |||       ||| | ||| | | || |    | ||||| || ||||| || ||||||||||| |||||  |||||||||| || || |||||||||||||| ||||| ||||| || ||||| || ||||| |||||
-----------------------------gtaag-gagggagagagctccgcattttcgtgctagagcttt-gcgcttct---ttcgcagGGAGAGCTGGAGTCCCCATGGAAGTCATGGGACTGATGCTTGGGGACTTTGTGGACGAGTACACTGTTCGCGTGGTGGACGTCTTTGCGATGCCTCAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311007|gb|FK004402.1|FK004402
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
EST: gi|26046087|gb|CA783422.1|CA783422
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
EST: gi|298177021|gb|HO023382.1|HO023382
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTTG
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
EST: gi|192311008|gb|FK004403.1|FK004403
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
EST: gi|192326436|gb|FK017708.1|FK017708
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
EST: gi|8403627|gb|BE059261.1|BE059261
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
EST: gi|298184439|gb|HO029652.1|HO029652
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
EST: gi|298178788|gb|HO024523.1|HO024523
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
EST: gi|208219652|gb|GE016578.1|GE016578
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTAGGGGTT
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCT-GGGGTT
EST: gi|208152504|gb|GD949105.1|GD949105
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
EST: gi|298166786|gb|HO010225.1|HO010225
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
EST: gi|192321561|gb|FK011791.1|FK011791
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCG
EST: gi|192310873|gb|FK001563.1|FK001563
EST:     CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACG                         GAAGGGCTGGGGTTCCCCTGGAAGTGATGGGTTTGATGCTT
genomic: CGAGCAGGTCTACATCTCCTCACTCGCTCTCCTCAAGATGCTGAAGCACGgtaaagtcca ... gtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtcatggggtacccgattacaaaattagggttttcgtgtttttgtaattgcagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCGTGGACGAGTACACCGTTCGTGTGGTTGATGTCTTCGCAATGCCGCAGAG
                                        tttttgt  CT-rich tract
                 attacaaaatta  TA-rich tract